Variant report

Variant	rs12295733
Chromosome Location	chr11:83194680-83194681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10501541	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233631	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233634	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233659	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs11601201	0.84[ASN][1000 genomes]
rs12271855	0.89[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12273919	0.84[CEU][hapmap]
rs12279615	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12287099	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12287103	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12287201	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12288797	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12290090	0.84[CEU][hapmap]
rs12291733	0.83[CEU][hapmap]
rs12294748	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1367983	0.89[CEU][hapmap];0.89[GIH][hapmap];0.84[ASN][1000 genomes]
rs1367986	0.84[CEU][hapmap]
rs1432050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541891	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17145339	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17145376	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs17461216	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522327	0.83[ASW][hapmap];0.89[CEU][hapmap];0.88[MEX][hapmap];0.84[ASN][1000 genomes]
rs1835762	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2043208	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35393309	0.84[ASN][1000 genomes]
rs4584604	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57437963	0.86[ASN][1000 genomes]
rs61568057	0.86[ASN][1000 genomes]
rs67025044	0.84[ASN][1000 genomes]
rs68058076	0.84[ASN][1000 genomes]
rs7103498	0.84[CEU][hapmap]
rs7123816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946636	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7927929	0.84[ASN][1000 genomes]
rs9787813	0.82[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9787866	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804591	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12295733	ME3	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83187200-83196600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83191800-83195800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:83192200-83195000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:83192200-83196800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83192400-83195000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83192400-83196000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:83192800-83195000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:83192800-83195000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:83192800-83195000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:83192800-83195200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:83192800-83196400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:83192800-83197400	Weak transcription	Brain Angular Gyrus	brain
13	chr11:83192800-83211200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:83193000-83195000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:83193000-83197600	Weak transcription	Brain Anterior Caudate	brain
16	chr11:83194200-83195000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:83194200-83195000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:83194400-83194800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:83194400-83194800	Weak transcription	H9 Cell Line	embryonic stem cell

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