Variant report

Variant	rs12273919
Chromosome Location	chr11:83276059-83276060
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10501541	0.84[CEU][hapmap]
rs10501543	0.83[AFR][1000 genomes]
rs10501544	0.85[ASW][hapmap];0.89[CEU][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs11233634	0.84[CEU][hapmap]
rs11233637	0.84[CEU][hapmap]
rs11233639	0.84[CEU][hapmap]
rs11233640	0.84[CEU][hapmap]
rs11233659	0.84[CEU][hapmap]
rs11233669	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233674	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233696	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes]
rs11233697	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11233698	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12271855	0.84[CEU][hapmap]
rs12276903	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs12278831	0.85[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[LWK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs12280583	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs12280692	0.83[AFR][1000 genomes]
rs12282317	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs12288797	0.84[CEU][hapmap]
rs12290090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12291033	0.89[CEU][hapmap]
rs12291733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12291743	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap]
rs12293731	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs12295733	0.84[CEU][hapmap]
rs1367983	0.84[CEU][hapmap]
rs1367986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1432047	0.82[AFR][1000 genomes]
rs1432048	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs1432050	0.84[CEU][hapmap]
rs1541891	0.84[CEU][hapmap]
rs17145339	0.84[CEU][hapmap]
rs17145376	0.84[CEU][hapmap]
rs17461216	0.84[CEU][hapmap]
rs17522327	0.84[CEU][hapmap]
rs35734934	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4100074	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55765915	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57980890	0.84[AFR][1000 genomes]
rs58543836	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61519522	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103498	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.92[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7123816	0.84[CEU][hapmap]
rs725192	0.89[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs919663	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs919664	0.84[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83261800-83277200	Weak transcription	Hela-S3	cervix
2	chr11:83266400-83278000	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83266600-83278000	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83275400-83276200	Enhancers	Brain Substantia Nigra	brain
5	chr11:83275800-83276600	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links