Variant report

Variant	rs11233634
Chromosome Location	chr11:83192079-83192080
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10501541	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233631	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233659	0.89[CEU][hapmap];0.84[ASN][1000 genomes]
rs11601201	0.84[ASN][1000 genomes]
rs12271855	0.89[CEU][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12273919	0.84[CEU][hapmap]
rs12279615	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287099	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287103	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12287201	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12290090	0.84[CEU][hapmap]
rs12291733	0.83[CEU][hapmap]
rs12294748	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12295733	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367983	0.89[CEU][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.84[ASN][1000 genomes]
rs1367986	0.84[CEU][hapmap]
rs1432050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541891	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17145339	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17145376	0.89[CEU][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs17461216	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17522327	0.89[CEU][hapmap];0.83[CHD][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1835762	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2043208	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35393309	0.84[ASN][1000 genomes]
rs4584604	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57437963	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61568057	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs67025044	0.84[ASN][1000 genomes]
rs68058076	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7103498	0.84[CEU][hapmap]
rs7123816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946636	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927929	0.84[ASN][1000 genomes]
rs9787813	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9787866	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804591	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11233634	CCDC90B	cis	Artery Tibial	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83187200-83196600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83188800-83192600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:83191000-83192400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:83191200-83192800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:83191200-83192800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:83191200-83192800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:83191200-83193000	Enhancers	Brain Anterior Caudate	brain
8	chr11:83191400-83192200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:83191400-83192200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:83191400-83192200	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:83191400-83192400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:83191400-83192800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:83191400-83192800	Enhancers	Brain Angular Gyrus	brain
14	chr11:83191600-83192800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:83191600-83193000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:83191600-83193800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:83191600-83194000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:83191800-83192200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:83191800-83192800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:83191800-83195800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:83192000-83192200	Genic enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:83192000-83192200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr11:83192000-83192800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:83192000-83192800	Enhancers	Brain Inferior Temporal Lobe	brain

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