Variant report

Variant	rs10501541
Chromosome Location	chr11:83189400-83189401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11233631	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233634	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233659	0.89[CEU][hapmap];0.86[ASN][1000 genomes]
rs11601201	0.86[ASN][1000 genomes]
rs12271855	0.89[CEU][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12273919	0.84[CEU][hapmap]
rs12275432	0.82[ASN][1000 genomes]
rs12279615	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12287099	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12287103	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12287201	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12290090	0.84[CEU][hapmap]
rs12291733	0.83[CEU][hapmap]
rs12294748	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12295733	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1367983	0.89[CEU][hapmap];0.83[CHD][hapmap];0.89[GIH][hapmap];0.86[ASN][1000 genomes]
rs1367986	0.84[CEU][hapmap]
rs1432050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1541891	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17145339	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17145376	0.89[CEU][hapmap];0.84[CHD][hapmap];0.86[ASN][1000 genomes]
rs17461216	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17522327	0.89[CEU][hapmap];0.83[CHD][hapmap];0.88[MEX][hapmap];0.86[ASN][1000 genomes]
rs1835762	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs2043208	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35393309	0.86[ASN][1000 genomes]
rs4584604	1.00[ASN][1000 genomes]
rs57437963	0.88[ASN][1000 genomes]
rs59824513	0.82[ASN][1000 genomes]
rs60846553	0.82[ASN][1000 genomes]
rs61568057	0.88[ASN][1000 genomes]
rs67025044	0.86[ASN][1000 genomes]
rs68058076	0.86[ASN][1000 genomes]
rs7103498	0.84[CEU][hapmap]
rs7123816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72946636	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7927929	0.87[ASN][1000 genomes]
rs9787813	0.82[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787866	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9804591	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83183600-83192000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83183800-83191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83183800-83191200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83187200-83196600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83187400-83191200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:83187400-83191200	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83187400-83191400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:83187400-83191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:83187400-83191400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:83187600-83191400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:83187600-83191600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:83188800-83192600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:83189200-83189400	Enhancers	Fetal Lung	lung

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