Variant report

Variant	rs17545474
Chromosome Location	chr11:83339781-83339782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83333082..83335940-chr11:83337956..83341610,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10501543	0.80[EUR][1000 genomes]
rs10501544	0.81[EUR][1000 genomes]
rs11233696	0.80[EUR][1000 genomes]
rs11233697	0.83[CHD][hapmap];0.80[EUR][1000 genomes]
rs11233698	0.80[EUR][1000 genomes]
rs11233703	0.82[JPT][hapmap]
rs11233705	0.82[JPT][hapmap]
rs11233708	0.86[MEX][hapmap]
rs11233711	0.84[CEU][hapmap]
rs12273560	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12273967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12275022	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12275254	0.82[JPT][hapmap];0.80[MEX][hapmap]
rs12278831	0.83[CHD][hapmap];0.80[EUR][1000 genomes]
rs12280692	0.80[EUR][1000 genomes]
rs12282021	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12282317	0.80[EUR][1000 genomes]
rs12291033	0.81[EUR][1000 genomes]
rs12293731	0.80[EUR][1000 genomes]
rs12294560	0.81[EUR][1000 genomes]
rs1367980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432048	0.80[EUR][1000 genomes]
rs2060147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116477	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2374447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4143852	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs4480567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536489	0.82[JPT][hapmap]
rs57980890	0.81[EUR][1000 genomes]
rs58847848	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60809470	0.81[EUR][1000 genomes]
rs609948	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs616414	0.82[JPT][hapmap]
rs617335	0.82[JPT][hapmap]
rs645596	0.80[MEX][hapmap]
rs66819432	0.81[EUR][1000 genomes]
rs7105588	0.82[JPT][hapmap];0.86[MEX][hapmap]
rs7125165	0.85[MEX][hapmap]
rs7131460	0.82[JPT][hapmap];0.80[MEX][hapmap]
rs725192	0.80[EUR][1000 genomes]
rs7949429	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs919663	0.80[EUR][1000 genomes]
rs919664	0.80[EUR][1000 genomes]
rs9734327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983589	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs983590	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs984759	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs984760	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347751	chr11:83339741-83339881	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83324200-83341200	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83324400-83340400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83335800-83340200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83336200-83340400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83339400-83340000	Enhancers	NHEK	skin
6	chr11:83339600-83339800	Enhancers	Brain Hippocampus Middle	brain
7	chr11:83339600-83340000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:83339600-83341800	Enhancers	Fetal Brain Male	brain

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