Variant report

Variant	rs11233708
Chromosome Location	chr11:83377964-83377965
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11233709	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233714	0.91[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12098926	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12223210	0.85[YRI][hapmap]
rs12223386	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12226177	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12275254	0.93[MEX][hapmap];0.86[TSI][hapmap]
rs1367980	0.93[MEX][hapmap]
rs17545474	0.86[MEX][hapmap]
rs1868892	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs2060147	0.93[MEX][hapmap]
rs2443455	0.84[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];0.90[ASN][1000 genomes]
rs4480567	0.93[MEX][hapmap]
rs587103	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs604276	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs604787	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs616414	0.86[MEX][hapmap]
rs617859	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs633338	0.83[ASN][1000 genomes]
rs641737	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs645596	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[MEX][hapmap];0.85[ASN][1000 genomes]
rs650206	0.96[CEU][hapmap];0.94[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs6592137	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592138	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs668025	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs688414	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7105588	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs7106608	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7109939	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7125165	0.96[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes]
rs7131460	0.93[MEX][hapmap];0.86[TSI][hapmap]
rs7927393	0.82[ASN][1000 genomes]
rs7928379	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs7946175	0.91[ASN][1000 genomes]
rs7952084	0.84[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs983589	0.86[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11233708	C11orf82	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83374000-83379200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83374000-83386600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83374000-83387000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:83374600-83378600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:83374600-83387200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83374800-83379200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83374800-83392000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:83375400-83378400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:83375600-83378400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:83375600-83379200	Weak transcription	Brain Substantia Nigra	brain
11	chr11:83375600-83384400	Weak transcription	Fetal Heart	heart
12	chr11:83376000-83379200	Weak transcription	Fetal Brain Male	brain
13	chr11:83377400-83378000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:83377400-83378200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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