Variant report

Variant	rs2060147
Chromosome Location	chr11:83341316-83341317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83333082..83335940-chr11:83337956..83341610,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11233697	0.83[CHD][hapmap]
rs11233703	0.82[JPT][hapmap]
rs11233704	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs11233705	0.82[JPT][hapmap];0.92[AFR][1000 genomes]
rs11233708	0.93[MEX][hapmap]
rs11233711	0.84[CEU][hapmap]
rs12273560	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12273967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12275022	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12275254	0.82[JPT][hapmap];0.86[MEX][hapmap]
rs12278831	0.83[CHD][hapmap]
rs12282021	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1367980	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17545474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116477	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2374447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143852	0.82[JPT][hapmap]
rs4480567	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs536489	0.82[JPT][hapmap]
rs58847848	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs609948	0.82[JPT][hapmap];0.85[YRI][hapmap]
rs616414	0.82[JPT][hapmap]
rs617335	0.82[JPT][hapmap]
rs645596	0.86[MEX][hapmap]
rs650206	0.85[MEX][hapmap]
rs67079375	0.88[AFR][1000 genomes]
rs7105588	0.94[ASW][hapmap];0.82[JPT][hapmap];0.89[LWK][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7131460	0.89[ASW][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs7949429	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9734327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs983589	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs983590	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs984759	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs984760	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83339600-83341800	Enhancers	Fetal Brain Male	brain
2	chr11:83339800-83341400	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83340200-83341800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:83340200-83341800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:83340200-83341800	Enhancers	Fetal Heart	heart
6	chr11:83340200-83341800	Enhancers	Hela-S3	cervix
7	chr11:83340200-83342200	Enhancers	Brain Substantia Nigra	brain
8	chr11:83340400-83341400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:83340600-83341600	Enhancers	Fetal Lung	lung
10	chr11:83341000-83341400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:83341000-83342000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr11:83341000-83357200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:83341200-83341400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:83341200-83341400	Enhancers	Brain Anterior Caudate	brain
15	chr11:83341200-83341800	Enhancers	Fetal Intestine Small	intestine
16	chr11:83341200-83341800	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links