Variant report

Variant	rs11233711
Chromosome Location	chr11:83388141-83388142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1037353	0.82[JPT][hapmap]
rs10501545	0.80[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs10501546	0.82[JPT][hapmap]
rs10792691	0.86[ASN][1000 genomes]
rs10792692	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898148	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10898150	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898151	0.92[ASN][1000 genomes]
rs10898152	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11233718	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233719	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233720	0.86[ASN][1000 genomes]
rs11233721	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11233722	0.92[ASN][1000 genomes]
rs11233723	0.92[ASN][1000 genomes]
rs11233724	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233725	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233726	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233730	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233731	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs11233751	0.82[JPT][hapmap]
rs11604822	0.86[ASN][1000 genomes]
rs11605382	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12222455	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12223210	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225388	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12225390	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12225687	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12273560	0.84[CEU][hapmap]
rs12273967	0.84[CEU][hapmap]
rs12275022	0.84[CEU][hapmap]
rs12282021	0.84[CEU][hapmap]
rs1367980	0.84[CEU][hapmap]
rs1451397	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17545474	0.84[CEU][hapmap]
rs17548333	0.81[JPT][hapmap]
rs1945309	0.85[GIH][hapmap];0.82[JPT][hapmap]
rs2044863	0.82[JPT][hapmap]
rs2060147	0.84[CEU][hapmap]
rs2374447	0.84[CEU][hapmap]
rs34258008	0.92[ASN][1000 genomes]
rs35508643	0.85[ASN][1000 genomes]
rs4480567	0.84[CEU][hapmap]
rs67463881	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7101642	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs7104950	0.82[JPT][hapmap]
rs7111226	0.82[JPT][hapmap]
rs7118583	0.82[JPT][hapmap]
rs7126086	0.82[GIH][hapmap]
rs7130838	0.82[JPT][hapmap]
rs7342211	0.91[JPT][hapmap]
rs7927165	0.83[CEU][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7931407	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7931558	0.82[JPT][hapmap]
rs7931662	0.92[ASN][1000 genomes]
rs7933581	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7933908	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7937214	0.82[JPT][hapmap]
rs7945102	0.82[JPT][hapmap]
rs7946060	0.95[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs7948831	0.82[JPT][hapmap]
rs7948906	0.91[EUR][1000 genomes]
rs7949241	0.88[EUR][1000 genomes]
rs7950988	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs921452	0.82[JPT][hapmap]
rs9734327	0.84[CEU][hapmap]
rs983589	0.84[CEU][hapmap]
rs983590	0.84[CEU][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83374800-83392000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:83378000-83390800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83384200-83390200	Enhancers	Fetal Brain Male	brain
4	chr11:83386200-83391600	Weak transcription	Hela-S3	cervix
5	chr11:83386800-83388200	Enhancers	Brain Substantia Nigra	brain
6	chr11:83387000-83388200	Enhancers	Brain Angular Gyrus	brain
7	chr11:83387000-83388200	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:83387200-83388200	Enhancers	Fetal Heart	heart
9	chr11:83387600-83391000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:83387800-83388800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:83387800-83388800	Weak transcription	Fetal Brain Female	brain
12	chr11:83387800-83391800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:83387800-83392200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:83388000-83388800	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:83388000-83388800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:83388000-83389200	Weak transcription	Brain Anterior Caudate	brain

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