Variant report

Variant	rs12225388
Chromosome Location	chr11:83405879-83405880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10501545	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10792691	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10792692	0.94[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898148	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898149	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10898150	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898151	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10898152	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap];0.89[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11233711	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11233718	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11233719	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233720	0.99[ASN][1000 genomes]
rs11233721	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11233722	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11233723	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11233724	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233725	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233731	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11604822	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11605382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11822921	0.82[EUR][1000 genomes]
rs12222455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12223210	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12225390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291851	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1451397	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945309	0.88[GIH][hapmap];0.84[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs34258008	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35508643	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57545594	0.82[EUR][1000 genomes]
rs67463881	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7101642	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7104950	0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7111226	0.84[JPT][hapmap]
rs7126086	0.85[GIH][hapmap]
rs7342212	0.81[EUR][1000 genomes]
rs7927165	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7931407	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7931662	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7933581	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7933908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7945102	0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7946060	0.88[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7948831	0.84[JPT][hapmap]
rs7948906	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7949241	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7950988	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.88[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83402000-83407200	Enhancers	Brain Anterior Caudate	brain
2	chr11:83402200-83406600	Enhancers	Brain Substantia Nigra	brain
3	chr11:83402800-83409800	Weak transcription	Psoas Muscle	Psoas
4	chr11:83402800-83413000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:83403000-83409800	Weak transcription	Pancreas	Pancrea
6	chr11:83403800-83406000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:83403800-83406000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:83403800-83406000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:83404200-83406000	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:83404400-83406000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:83404400-83406000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:83404400-83406000	Enhancers	HMEC	breast
13	chr11:83404600-83406200	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:83405000-83406000	Enhancers	Fetal Intestine Large	intestine
15	chr11:83405000-83406000	Enhancers	NHEK	skin
16	chr11:83405400-83406000	Enhancers	Small Intestine	intestine
17	chr11:83405400-83406600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr11:83405400-83417400	Weak transcription	Hela-S3	cervix
19	chr11:83405600-83406000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:83405600-83406000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:83405800-83406000	Flanking Active TSS	Brain Angular Gyrus	brain
22	chr11:83405800-83406000	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr11:83405800-83406000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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