Variant report

Variant	rs10898150
Chromosome Location	chr11:83417761-83417762
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1037353	0.82[JPT][hapmap]
rs10501545	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs10501546	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10792691	0.85[ASN][1000 genomes]
rs10792692	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898151	0.99[ASN][1000 genomes]
rs10898152	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.99[ASN][1000 genomes]
rs11233711	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233718	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233719	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233720	0.85[ASN][1000 genomes]
rs11233721	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233722	0.99[ASN][1000 genomes]
rs11233723	0.99[ASN][1000 genomes]
rs11233724	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233725	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233731	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.91[ASN][1000 genomes]
rs11233751	0.82[JPT][hapmap]
rs11604822	0.85[ASN][1000 genomes]
rs11605382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11822921	0.82[EUR][1000 genomes]
rs12222455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12223210	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225388	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12225390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1451397	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17548333	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1945309	0.88[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.80[EUR][1000 genomes]
rs2044863	0.82[JPT][hapmap]
rs34258008	0.99[ASN][1000 genomes]
rs35508643	0.91[ASN][1000 genomes]
rs57545594	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66509934	0.80[ASN][1000 genomes]
rs66671165	0.80[ASN][1000 genomes]
rs66768024	0.80[ASN][1000 genomes]
rs67463881	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101642	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7104950	0.82[JPT][hapmap]
rs7111226	0.82[JPT][hapmap]
rs7118583	0.82[JPT][hapmap]
rs7126086	0.85[GIH][hapmap]
rs7130838	0.82[JPT][hapmap]
rs72954544	0.80[ASN][1000 genomes]
rs72954570	0.80[ASN][1000 genomes]
rs7342211	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs7342212	0.83[ASN][1000 genomes]
rs7927165	0.89[CEU][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7931407	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7931558	0.82[JPT][hapmap]
rs7931662	0.99[ASN][1000 genomes]
rs7933581	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7933908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7937214	0.82[JPT][hapmap]
rs7945102	0.82[JPT][hapmap]
rs7946060	1.00[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7948831	0.82[JPT][hapmap]
rs7948906	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7949241	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7950988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921452	0.82[JPT][hapmap];0.80[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83413200-83424400	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83417400-83418000	Flanking Active TSS	Hela-S3	cervix
3	chr11:83417400-83418400	Enhancers	HMEC	breast
4	chr11:83417600-83418000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:83417600-83418000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:83417600-83418000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:83417600-83418000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:83417600-83418000	Enhancers	Gastric	stomach
9	chr11:83417600-83418000	Enhancers	Pancreas	Pancrea

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