Variant report

Variant	rs7948906
Chromosome Location	chr11:83434012-83434013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10792692	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10898148	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10898150	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11233711	0.91[EUR][1000 genomes]
rs11233718	0.95[EUR][1000 genomes]
rs11233719	0.95[EUR][1000 genomes]
rs11233721	0.85[EUR][1000 genomes]
rs11233724	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11233725	0.96[EUR][1000 genomes]
rs11233726	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11233730	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11233734	0.87[ASN][1000 genomes]
rs1155508	0.85[ASN][1000 genomes]
rs11600452	0.84[ASN][1000 genomes]
rs11605075	0.86[ASN][1000 genomes]
rs11605382	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11822921	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12222455	0.98[EUR][1000 genomes]
rs12223210	0.96[EUR][1000 genomes]
rs12225388	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12225390	0.98[EUR][1000 genomes]
rs12225687	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12291851	0.89[ASN][1000 genomes]
rs12718483	0.85[ASN][1000 genomes]
rs13377566	0.85[ASN][1000 genomes]
rs1451397	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17159816	0.87[ASN][1000 genomes]
rs17159818	0.87[ASN][1000 genomes]
rs1945309	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57545594	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57681765	0.86[ASN][1000 genomes]
rs67463881	0.98[EUR][1000 genomes]
rs7101642	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7104950	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109065	0.86[ASN][1000 genomes]
rs7111226	0.87[ASN][1000 genomes]
rs7119106	0.85[ASN][1000 genomes]
rs7342211	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7342212	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73511043	0.86[ASN][1000 genomes]
rs7927165	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7933581	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7933908	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7945102	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7946060	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7948831	0.87[ASN][1000 genomes]
rs7949241	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7950988	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83425200-83435000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83425200-83435000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83425200-83435200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:83425400-83435200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83429200-83434800	Weak transcription	Fetal Intestine Large	intestine
6	chr11:83429200-83435000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83431400-83434800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:83431400-83435000	Enhancers	Hela-S3	cervix
9	chr11:83431600-83434200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:83431600-83434800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:83431600-83437800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:83432000-83436200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:83432200-83435000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:83432600-83435200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:83432600-83435600	Weak transcription	Brain Substantia Nigra	brain
16	chr11:83432800-83435400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:83432800-83435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:83433000-83435200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:83433200-83435000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:83433400-83434400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr11:83433800-83434200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:83433800-83434600	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:83433800-83434800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:83433800-83435200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:83434000-83434800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:83434000-83435000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:83434000-83435000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:83434000-83435000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links