Variant report

Variant	rs11233719
Chromosome Location	chr11:83402517-83402518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83396661..83398511-chr11:83401392..83404007,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10501545	0.89[ASN][1000 genomes]
rs10792691	0.91[ASN][1000 genomes]
rs10792692	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898148	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10898149	0.81[ASN][1000 genomes]
rs10898150	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898151	0.92[ASN][1000 genomes]
rs10898152	0.92[ASN][1000 genomes]
rs11233711	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233718	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233720	0.91[ASN][1000 genomes]
rs11233721	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11233722	0.92[ASN][1000 genomes]
rs11233723	0.92[ASN][1000 genomes]
rs11233724	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233725	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233726	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233730	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233731	0.85[ASN][1000 genomes]
rs11604822	0.91[ASN][1000 genomes]
rs11605382	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822921	0.82[EUR][1000 genomes]
rs12222455	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12223210	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225388	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225390	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225687	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1451397	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1945309	0.80[EUR][1000 genomes]
rs34258008	0.92[ASN][1000 genomes]
rs35508643	0.85[ASN][1000 genomes]
rs57545594	0.81[EUR][1000 genomes]
rs67463881	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs688414	0.88[AFR][1000 genomes]
rs7101642	0.92[EUR][1000 genomes]
rs7927165	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7931407	0.85[ASN][1000 genomes]
rs7931662	0.92[ASN][1000 genomes]
rs7933581	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7933908	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7946060	0.94[EUR][1000 genomes]
rs7948906	0.95[EUR][1000 genomes]
rs7949241	0.95[EUR][1000 genomes]
rs7950988	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350852	chr11:83400204-83402802	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83393000-83403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:83394000-83404400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:83394200-83402600	Weak transcription	Left Ventricle	heart
4	chr11:83394400-83402600	Weak transcription	Fetal Brain Male	brain
5	chr11:83399600-83404200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:83400400-83404800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:83400800-83404200	Weak transcription	Hela-S3	cervix
8	chr11:83401400-83405800	Enhancers	Fetal Heart	heart
9	chr11:83401800-83404800	Enhancers	Brain Angular Gyrus	brain
10	chr11:83402000-83402600	Enhancers	Right Atrium	heart
11	chr11:83402000-83402600	Enhancers	NHEK	skin
12	chr11:83402000-83402800	Enhancers	Adipose Nuclei	Adipose
13	chr11:83402000-83402800	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:83402000-83402800	Enhancers	Rectal Smooth Muscle	rectum
15	chr11:83402000-83403000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:83402000-83403000	Enhancers	Fetal Intestine Large	intestine
17	chr11:83402000-83403000	Enhancers	Fetal Intestine Small	intestine
18	chr11:83402000-83403000	Enhancers	Fetal Muscle Leg	muscle
19	chr11:83402000-83403400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:83402000-83405800	Enhancers	Brain Hippocampus Middle	brain
21	chr11:83402000-83407200	Enhancers	Brain Anterior Caudate	brain
22	chr11:83402200-83402800	Enhancers	Stomach Mucosa	stomach
23	chr11:83402200-83403000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:83402200-83403000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:83402200-83403000	Enhancers	Brain Cingulate Gyrus	brain
26	chr11:83402200-83403000	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr11:83402200-83406600	Enhancers	Brain Substantia Nigra	brain
28	chr11:83402400-83402800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:83402400-83402800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr11:83402400-83402800	Flanking Active TSS	Fetal Lung	lung
31	chr11:83402400-83402800	Enhancers	Psoas Muscle	Psoas
32	chr11:83402400-83402800	Enhancers	Right Ventricle	heart
33	chr11:83402400-83403000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:83402400-83403000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr11:83402400-83403000	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr11:83402400-83403000	Enhancers	Ovary	ovary
37	chr11:83402400-83403000	Enhancers	Pancreas	Pancrea
38	chr11:83402400-83403200	Enhancers	HUES6 Cell Line	embryonic stem cell

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