Variant report

Variant	rs34258008
Chromosome Location	chr11:83417514-83417515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10501545	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10792691	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10792692	0.99[ASN][1000 genomes]
rs10898148	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10898149	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10898150	0.99[ASN][1000 genomes]
rs10898151	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898152	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233711	0.92[ASN][1000 genomes]
rs11233718	0.95[ASN][1000 genomes]
rs11233719	0.92[ASN][1000 genomes]
rs11233720	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233721	0.94[ASN][1000 genomes]
rs11233722	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233723	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233724	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11233725	0.99[ASN][1000 genomes]
rs11233726	0.99[ASN][1000 genomes]
rs11233730	0.99[ASN][1000 genomes]
rs11233731	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233734	0.83[AMR][1000 genomes]
rs11600452	0.82[AMR][1000 genomes]
rs11604822	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11605075	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11605382	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12222455	0.95[ASN][1000 genomes]
rs12223210	0.99[ASN][1000 genomes]
rs12225388	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12225390	0.92[ASN][1000 genomes]
rs12225687	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1451397	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17159816	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17159818	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35508643	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57545594	0.84[ASN][1000 genomes]
rs633338	0.90[AFR][1000 genomes]
rs67463881	0.96[ASN][1000 genomes]
rs7101642	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7111226	0.82[AMR][1000 genomes]
rs7342211	0.81[ASN][1000 genomes]
rs7342212	0.82[ASN][1000 genomes]
rs7927165	0.97[ASN][1000 genomes]
rs7931407	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7931662	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933581	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7933908	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7948831	0.83[AMR][1000 genomes]
rs7950988	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83407000-83417600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83410400-83417600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83413200-83424400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:83413600-83417600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:83417400-83418000	Flanking Active TSS	Hela-S3	cervix
6	chr11:83417400-83418400	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links