Variant report

Variant	rs1451397
Chromosome Location	chr11:83411593-83411594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83411053..83411898-chr7:16967815..16968540,2	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10501545	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10792691	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10792692	0.94[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898149	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10898150	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898151	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10898152	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11233711	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233718	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11233719	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233720	0.93[ASN][1000 genomes]
rs11233721	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11233722	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11233723	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11233724	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233725	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233731	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11233734	0.83[ASN][1000 genomes]
rs11233741	0.83[JPT][hapmap]
rs1155508	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs11604822	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11605075	0.82[ASN][1000 genomes]
rs11605382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11605642	0.83[JPT][hapmap]
rs11822921	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12222455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12223210	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12225388	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12225390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12225687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12291851	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12718483	0.80[ASN][1000 genomes]
rs13377566	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs17146036	0.83[JPT][hapmap]
rs17159816	0.83[ASN][1000 genomes]
rs17159818	0.83[ASN][1000 genomes]
rs1945309	0.88[GIH][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34258008	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35508643	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs57545594	0.82[EUR][1000 genomes]
rs57681765	0.81[ASN][1000 genomes]
rs6592139	0.83[JPT][hapmap]
rs67463881	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7101642	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7104950	0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7109065	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs7109609	0.83[JPT][hapmap]
rs7111226	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs7119106	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7126086	0.85[GIH][hapmap];0.83[JPT][hapmap]
rs7342211	0.83[JPT][hapmap]
rs7342212	0.81[EUR][1000 genomes]
rs73511043	0.81[ASN][1000 genomes]
rs7927165	0.89[CEU][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7927526	0.83[JPT][hapmap]
rs7931407	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7931662	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7933581	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7933908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7945102	0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7946060	1.00[CEU][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7948831	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs7948906	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7949241	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7950988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83402800-83413000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:83405400-83417400	Weak transcription	Hela-S3	cervix
3	chr11:83406400-83411600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83407000-83417600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83407200-83412600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:83410400-83417600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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