Variant report

Variant	rs7950988
Chromosome Location	chr11:83422281-83422282
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10501545	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10792691	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10792692	0.94[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898149	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10898150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898151	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10898152	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11233711	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233718	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11233719	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11233720	0.93[ASN][1000 genomes]
rs11233721	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11233722	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11233723	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11233724	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233725	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11233731	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11233734	0.83[ASN][1000 genomes]
rs11233741	0.83[JPT][hapmap]
rs1155508	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs11604822	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11605075	0.82[ASN][1000 genomes]
rs11605382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11605642	0.83[JPT][hapmap]
rs11822921	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12222455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12223210	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12225388	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.88[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12225390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12225687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12291851	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12718483	0.80[ASN][1000 genomes]
rs13377566	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs1451397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17146036	0.83[JPT][hapmap]
rs17159816	0.83[ASN][1000 genomes]
rs17159818	0.83[ASN][1000 genomes]
rs1945309	0.83[GIH][hapmap];0.92[JPT][hapmap];0.84[MEX][hapmap];0.84[ASN][1000 genomes]
rs34258008	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35508643	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs57545594	0.80[EUR][1000 genomes]
rs57681765	0.81[ASN][1000 genomes]
rs633338	0.89[AFR][1000 genomes]
rs645596	0.96[YRI][hapmap]
rs6592139	0.83[JPT][hapmap]
rs67463881	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7101642	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7104950	0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7109065	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs7109609	0.83[JPT][hapmap]
rs7111226	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs7119106	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs7126086	0.80[GIH][hapmap];0.83[JPT][hapmap]
rs7342211	0.83[JPT][hapmap]
rs73511043	0.81[ASN][1000 genomes]
rs7927165	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7927526	0.86[GIH][hapmap];0.83[JPT][hapmap]
rs7931407	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7931662	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7933581	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7933908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7945102	0.92[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7946060	0.88[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7948831	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs7948906	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7949241	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83413200-83424400	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83418000-83429000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:83419800-83429200	Enhancers	Hela-S3	cervix
4	chr11:83420000-83422400	Weak transcription	Fetal Intestine Large	intestine
5	chr11:83420200-83424400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:83421200-83424400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83422000-83422800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:83422000-83422800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:83422000-83422800	Enhancers	Fetal Intestine Small	intestine
10	chr11:83422200-83422600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:83422200-83422600	Enhancers	Fetal Heart	heart
12	chr11:83422200-83422600	Enhancers	Pancreas	Pancrea
13	chr11:83422200-83422600	Enhancers	HepG2	liver
14	chr11:83422200-83422800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links