Variant report

Variant	rs11233718
Chromosome Location	chr11:83401948-83401949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83396661..83398511-chr11:83401392..83404007,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501545	0.86[ASN][1000 genomes]
rs10792691	0.89[ASN][1000 genomes]
rs10792692	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898148	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898150	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898151	0.95[ASN][1000 genomes]
rs10898152	0.95[ASN][1000 genomes]
rs11233711	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233719	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233720	0.89[ASN][1000 genomes]
rs11233721	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11233722	0.95[ASN][1000 genomes]
rs11233723	0.95[ASN][1000 genomes]
rs11233724	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233725	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233726	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233730	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233731	0.88[ASN][1000 genomes]
rs11604822	0.89[ASN][1000 genomes]
rs11605382	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11822921	0.82[EUR][1000 genomes]
rs12222455	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12223210	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12225388	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12225390	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12225687	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1451397	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1945309	0.80[EUR][1000 genomes]
rs34258008	0.95[ASN][1000 genomes]
rs35508643	0.88[ASN][1000 genomes]
rs57545594	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67463881	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7101642	0.92[EUR][1000 genomes]
rs7927165	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931407	0.88[ASN][1000 genomes]
rs7931662	0.95[ASN][1000 genomes]
rs7933581	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7933908	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7946060	0.94[EUR][1000 genomes]
rs7948906	0.95[EUR][1000 genomes]
rs7949241	0.95[EUR][1000 genomes]
rs7950988	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350852	chr11:83400204-83402802	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83393000-83403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:83393600-83402400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83393600-83402400	Weak transcription	Pancreas	Pancrea
4	chr11:83394000-83402400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83394000-83404400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:83394200-83402600	Weak transcription	Left Ventricle	heart
7	chr11:83394400-83402000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:83394400-83402600	Weak transcription	Fetal Brain Male	brain
9	chr11:83399600-83402200	Weak transcription	Brain Substantia Nigra	brain
10	chr11:83399600-83402400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:83399600-83404200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:83400200-83402200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:83400400-83402000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:83400400-83404800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:83400600-83402000	Weak transcription	Fetal Lung	lung
16	chr11:83400600-83402200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:83400800-83402000	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:83400800-83402200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:83400800-83404200	Weak transcription	Hela-S3	cervix
20	chr11:83401400-83405800	Enhancers	Fetal Heart	heart
21	chr11:83401800-83404800	Enhancers	Brain Angular Gyrus	brain

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