Variant report

Variant	rs11233730
Chromosome Location	chr11:83424952-83424953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83424329..83425829-chr17:41399539..41402288,2	K562	blood:
2	chr11:83424329..83425849-chr17:41398399..41400899,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1037353	0.82[JPT][hapmap]
rs10501545	0.86[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs10501546	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10792691	0.85[ASN][1000 genomes]
rs10792692	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898151	0.99[ASN][1000 genomes]
rs10898152	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11233711	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233718	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233719	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233720	0.85[ASN][1000 genomes]
rs11233721	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11233722	0.99[ASN][1000 genomes]
rs11233723	0.99[ASN][1000 genomes]
rs11233724	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233725	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233731	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs11233751	0.82[JPT][hapmap]
rs11604822	0.85[ASN][1000 genomes]
rs11605382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11822921	0.82[EUR][1000 genomes]
rs12222455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12223210	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225388	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12225390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12273560	0.81[CEU][hapmap]
rs12275022	0.81[CEU][hapmap]
rs12282021	0.81[CEU][hapmap]
rs1451397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17548333	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1945309	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs2044863	0.82[JPT][hapmap]
rs2374447	0.81[CEU][hapmap]
rs34258008	0.99[ASN][1000 genomes]
rs35508643	0.91[ASN][1000 genomes]
rs57545594	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66509934	0.80[ASN][1000 genomes]
rs66671165	0.80[ASN][1000 genomes]
rs66768024	0.80[ASN][1000 genomes]
rs67463881	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101642	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7104950	0.82[JPT][hapmap]
rs7111226	0.82[JPT][hapmap]
rs7118583	0.82[JPT][hapmap]
rs7130838	0.82[JPT][hapmap]
rs72954544	0.80[ASN][1000 genomes]
rs72954570	0.80[ASN][1000 genomes]
rs7342211	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs7342212	0.83[ASN][1000 genomes]
rs7927165	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7931407	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7931558	0.82[JPT][hapmap]
rs7931662	0.99[ASN][1000 genomes]
rs7933581	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7933908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7937214	0.82[JPT][hapmap]
rs7945102	0.83[JPT][hapmap]
rs7946060	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7948831	0.82[JPT][hapmap]
rs7948906	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7949241	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7950988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921452	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs9734327	0.81[CEU][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83418000-83429000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:83419800-83429200	Enhancers	Hela-S3	cervix
3	chr11:83422800-83425000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:83423800-83425600	Enhancers	Fetal Brain Male	brain
5	chr11:83424200-83425200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83424400-83425000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:83424400-83425000	Enhancers	Fetal Muscle Leg	muscle
8	chr11:83424400-83425200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:83424400-83425200	Enhancers	Brain Angular Gyrus	brain
10	chr11:83424400-83425200	Enhancers	Brain Anterior Caudate	brain
11	chr11:83424400-83425200	Enhancers	Brain Hippocampus Middle	brain
12	chr11:83424400-83425400	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:83424600-83425200	Enhancers	Fetal Brain Female	brain
14	chr11:83424600-83425400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:83424600-83425600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr11:83424800-83425000	Enhancers	GM12878-XiMat	blood
17	chr11:83424800-83425200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:83424800-83425600	Enhancers	Brain Inferior Temporal Lobe	brain

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