Variant report

Variant	rs11233751
Chromosome Location	chr11:83529103-83529104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:83529080-83529230	GM12872	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83527114..83529633-chr11:83531470..83533535,2	K562	blood:
2	chr11:82995863..82997418-chr11:83528316..83530767,2	K562	blood:

Variant related genes	Relation type
LDHAL6DP	TF binding region
ENSG00000255234	Chromatin interaction
ENSG00000137500	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1037353	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501546	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10501548	0.87[CEU][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.83[EUR][1000 genomes]
rs10792692	0.82[JPT][hapmap]
rs10898150	0.82[JPT][hapmap]
rs10898152	0.82[JPT][hapmap]
rs11233711	0.82[JPT][hapmap]
rs11233730	0.82[JPT][hapmap]
rs11233741	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1155310	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs1155508	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs11605382	0.82[JPT][hapmap]
rs11605642	0.90[JPT][hapmap]
rs12223210	0.82[JPT][hapmap]
rs12273815	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs12290852	1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs13377566	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17146036	0.90[JPT][hapmap]
rs17146120	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17482676	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17548333	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17548479	0.90[JPT][hapmap]
rs17548584	0.90[JPT][hapmap]
rs1945309	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2044863	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59848766	0.91[EUR][1000 genomes]
rs6592139	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs66773965	0.89[ASN][1000 genomes]
rs7101642	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs7104950	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7109065	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7109609	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7111226	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7118583	0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7119106	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7126086	0.90[JPT][hapmap]
rs7126807	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7130838	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7342211	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7926247	0.82[JPT][hapmap];1.00[MEX][hapmap]
rs7926468	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs7927008	0.80[ASN][1000 genomes]
rs7927526	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7931558	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7937214	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7943895	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7945102	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7946060	0.82[JPT][hapmap]
rs7948831	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs921452	0.90[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83526000-83530200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:83526800-83534600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:83527000-83529400	Weak transcription	HMEC	breast
4	chr11:83527200-83531200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:83527400-83529200	Weak transcription	HUVEC	blood vessel
6	chr11:83527400-83529200	Weak transcription	NH-A	brain
7	chr11:83527600-83529200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:83527600-83530600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83527600-83532600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:83527800-83530200	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:83527800-83530800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:83527800-83531200	Weak transcription	Brain Anterior Caudate	brain
13	chr11:83527800-83531200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:83527800-83539200	Weak transcription	Brain Angular Gyrus	brain
15	chr11:83528000-83529200	Weak transcription	Hela-S3	cervix

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