Variant report
| Variant | rs17548584 |
|---|---|
| Chromosome Location | chr11:83469277-83469278 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10219353 | 0.80[AMR][1000 genomes] |
| rs1037353 | 0.90[JPT][hapmap] |
| rs10501546 | 1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs10501548 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs11233741 | 0.81[JPT][hapmap] |
| rs11233751 | 0.90[JPT][hapmap] |
| rs11233848 | 1.00[ASW][hapmap] |
| rs11233853 | 1.00[ASW][hapmap] |
| rs1155310 | 0.81[JPT][hapmap] |
| rs1155508 | 0.87[CEU][hapmap];0.81[JPT][hapmap] |
| rs11605642 | 0.81[JPT][hapmap] |
| rs12273815 | 0.82[CHB][hapmap];0.90[JPT][hapmap] |
| rs12290852 | 0.81[JPT][hapmap] |
| rs13377566 | 0.81[JPT][hapmap] |
| rs1384754 | 1.00[ASW][hapmap] |
| rs17146036 | 0.81[JPT][hapmap] |
| rs17482520 | 0.81[EUR][1000 genomes] |
| rs17482676 | 0.87[CEU][hapmap];0.88[JPT][hapmap] |
| rs17548333 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs17548479 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2044863 | 0.90[JPT][hapmap] |
| rs57681765 | 0.82[EUR][1000 genomes] |
| rs6592139 | 0.81[JPT][hapmap] |
| rs66509934 | 0.83[EUR][1000 genomes] |
| rs66671165 | 0.83[EUR][1000 genomes] |
| rs66768024 | 0.83[EUR][1000 genomes] |
| rs7109065 | 0.87[CEU][hapmap];0.81[JPT][hapmap] |
| rs7109609 | 0.81[JPT][hapmap] |
| rs7118583 | 0.90[JPT][hapmap] |
| rs7119106 | 0.87[CEU][hapmap];0.81[JPT][hapmap] |
| rs7126086 | 0.87[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap] |
| rs7126807 | 0.88[JPT][hapmap] |
| rs7130838 | 0.90[JPT][hapmap] |
| rs72954544 | 0.83[EUR][1000 genomes] |
| rs7342211 | 0.81[JPT][hapmap] |
| rs7926468 | 0.81[JPT][hapmap] |
| rs7927526 | 0.87[CEU][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap] |
| rs7931558 | 0.90[JPT][hapmap] |
| rs7937214 | 0.90[JPT][hapmap] |
| rs7941665 | 1.00[LWK][hapmap] |
| rs921452 | 1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:83460800-83471800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 2 | chr11:83461200-83472000 | Weak transcription | Brain Inferior Temporal Lobe | brain |
