Variant report

Variant	rs1037353
Chromosome Location	chr11:83525588-83525589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10501546	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10501548	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs10792692	0.82[JPT][hapmap]
rs10898150	0.82[JPT][hapmap]
rs10898152	0.82[JPT][hapmap]
rs11233711	0.82[JPT][hapmap]
rs11233730	0.82[JPT][hapmap]
rs11233741	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs11233751	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155310	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.88[TSI][hapmap]
rs1155508	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs11605382	0.82[JPT][hapmap]
rs11605642	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12223210	0.82[JPT][hapmap]
rs12273815	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs12290852	1.00[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs13377566	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs17146036	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs17146120	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17482676	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs17548333	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs17548479	0.90[JPT][hapmap]
rs17548584	0.90[JPT][hapmap]
rs1945309	0.82[JPT][hapmap]
rs2044863	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59848766	0.92[EUR][1000 genomes]
rs6592139	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs66773965	0.89[ASN][1000 genomes]
rs7101642	0.82[JPT][hapmap]
rs7104950	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7109065	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7109609	0.89[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs7111226	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs7118583	1.00[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs7119106	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7126086	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7126807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7127293	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs7130838	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs7342211	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7926247	0.83[CEU][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap]
rs7926468	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs7927008	0.80[ASN][1000 genomes]
rs7927526	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7931558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs7937214	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7943895	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes]
rs7945102	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7946060	0.82[JPT][hapmap]
rs7948831	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs921452	0.89[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83517200-83526400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83519600-83526600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83520000-83525800	Weak transcription	Brain Anterior Caudate	brain
4	chr11:83523800-83527800	Enhancers	Brain Hippocampus Middle	brain
5	chr11:83524200-83527600	Enhancers	Brain Substantia Nigra	brain
6	chr11:83524800-83525800	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83524800-83526800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:83525000-83526200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:83525200-83525600	Weak transcription	Brain Cingulate Gyrus	brain

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