Variant report

Variant	rs12290852
Chromosome Location	chr11:83487889-83487890
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1037353	1.00[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap]
rs10501546	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10501548	0.81[JPT][hapmap]
rs10792692	0.82[JPT][hapmap]
rs11233741	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11233751	1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs1155310	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes]
rs1155313	0.96[ASN][1000 genomes]
rs1155508	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11605642	0.81[JPT][hapmap]
rs12285846	0.81[ASN][1000 genomes]
rs13377566	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17146036	0.81[JPT][hapmap]
rs17482676	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs17548333	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs17548479	0.81[JPT][hapmap]
rs17548584	0.81[JPT][hapmap]
rs1945309	0.82[CHB][hapmap]
rs2044863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs56697477	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56836954	0.93[EUR][1000 genomes]
rs60904911	0.92[EUR][1000 genomes]
rs6592139	0.90[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs66773965	0.83[EUR][1000 genomes]
rs68127610	0.91[EUR][1000 genomes]
rs7101642	0.80[CHB][hapmap]
rs7104950	0.90[CHB][hapmap]
rs7109065	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7109609	0.90[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]
rs7111226	0.90[CHB][hapmap]
rs7116773	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7118583	0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7119010	0.89[EUR][1000 genomes]
rs7119106	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7126086	0.80[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap]
rs7126807	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7127293	0.89[CEU][hapmap];0.85[ASN][1000 genomes]
rs7130838	1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs716865	0.96[ASN][1000 genomes]
rs7342211	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7926247	0.80[TSI][hapmap]
rs7926468	1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap]
rs7927526	0.90[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs7931558	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7936832	0.87[ASN][1000 genomes]
rs7937214	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7943895	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7945102	0.89[CHB][hapmap]
rs7948831	0.90[CHB][hapmap]
rs921452	0.90[CHB][hapmap];0.90[JPT][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83482200-83489400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:83485800-83490600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:83486000-83489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:83486200-83489200	Weak transcription	NHEK	skin
5	chr11:83486200-83489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:83486400-83489000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:83487400-83488000	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:83487400-83488000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:83487600-83488000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83487600-83488000	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links