Variant report

Variant	rs7941665
Chromosome Location	chr11:83548648-83548649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83547601..83549006-chr11:83972443..83973468,9	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10792693	0.86[EUR][1000 genomes]
rs1113082	0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11233755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1155448	0.89[ASN][1000 genomes]
rs11820522	0.91[CEU][hapmap];0.89[ASN][1000 genomes]
rs12794931	0.89[ASN][1000 genomes]
rs12799838	0.86[EUR][1000 genomes]
rs1400310	0.96[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1451393	0.84[CEU][hapmap];0.96[MEX][hapmap];0.85[EUR][1000 genomes]
rs1516617	0.87[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1516618	0.87[CEU][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1516622	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1516623	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1516624	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17548479	1.00[LWK][hapmap]
rs17548584	1.00[LWK][hapmap]
rs1961555	0.87[EUR][1000 genomes]
rs2040310	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2040311	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2040312	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3851171	0.86[EUR][1000 genomes]
rs3862775	0.89[EUR][1000 genomes]
rs3862776	0.88[EUR][1000 genomes]
rs4117186	1.00[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4362168	0.83[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs4396309	0.84[CEU][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs4480568	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592143	0.88[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs6592144	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592145	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.91[MEX][hapmap];0.86[ASN][1000 genomes]
rs6592148	0.84[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7107629	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7122007	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs7124506	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7130803	0.91[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7483854	0.86[EUR][1000 genomes]
rs7937553	0.86[EUR][1000 genomes]
rs7946278	0.86[EUR][1000 genomes]
rs7946494	0.91[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7947211	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7941665	PRCP	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83545400-83548800	Enhancers	Brain Angular Gyrus	brain
2	chr11:83545400-83549600	Enhancers	Brain Anterior Caudate	brain
3	chr11:83545400-83550000	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83545400-83550200	Enhancers	Brain Substantia Nigra	brain
5	chr11:83545600-83549200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:83546000-83550200	Enhancers	Liver	Liver
7	chr11:83546200-83550000	Enhancers	HepG2	liver
8	chr11:83546800-83549400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:83546800-83549600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:83548200-83549600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:83548600-83549600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:83548600-83549600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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