Variant report

Variant	rs4480568
Chromosome Location	chr11:83537007-83537008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10792693	0.86[EUR][1000 genomes]
rs1113082	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11233755	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1155448	0.93[ASN][1000 genomes]
rs11820522	0.95[CEU][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12794931	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12799838	0.86[EUR][1000 genomes]
rs1400310	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1451393	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs1516617	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1516618	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1516622	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1516623	0.90[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1516624	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1961555	0.87[EUR][1000 genomes]
rs2040310	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2040311	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2040312	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3851171	0.86[EUR][1000 genomes]
rs3862775	0.88[EUR][1000 genomes]
rs3862776	0.88[EUR][1000 genomes]
rs4117186	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4362168	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4396309	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs6592143	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs6592144	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592145	0.85[CEU][hapmap];0.90[ASN][1000 genomes]
rs6592148	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7107629	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7122007	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs7124506	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7130803	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7483854	0.86[EUR][1000 genomes]
rs7937553	0.85[EUR][1000 genomes]
rs7941665	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7946278	0.87[EUR][1000 genomes]
rs7946494	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7947211	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14634	chr11:83532806-83538775	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83527800-83539200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83529800-83537800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:83535000-83537800	Weak transcription	NH-A	brain
4	chr11:83535000-83538800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83535000-83546600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:83535200-83537200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:83535400-83539000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83535600-83538800	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:83536600-83538400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:83536800-83537400	Enhancers	Brain Substantia Nigra	brain

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