Variant report

Variant	rs2040312
Chromosome Location	chr11:83538271-83538272
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10792693	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1113082	1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11233755	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1155448	0.82[ASN][1000 genomes]
rs11820522	0.92[CEU][hapmap];0.82[ASN][1000 genomes]
rs1226063	1.00[YRI][hapmap]
rs12283621	0.80[EUR][1000 genomes]
rs12794931	0.82[ASN][1000 genomes]
rs12799838	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1400310	0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1451391	0.82[EUR][1000 genomes]
rs1451392	0.82[EUR][1000 genomes]
rs1451393	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1516617	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1516618	0.87[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1516622	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1516623	0.87[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1516624	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1961555	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2040310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2040311	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3851171	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3862775	0.91[EUR][1000 genomes]
rs3862776	0.90[EUR][1000 genomes]
rs4117186	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4362168	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4396309	0.92[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4480568	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592143	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs6592144	0.92[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6592145	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs6592147	1.00[YRI][hapmap]
rs6592148	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7107629	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7122007	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7124506	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7130803	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs715858	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs7483854	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7937553	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7937829	0.85[EUR][1000 genomes]
rs7941665	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7946278	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7946494	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7947211	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9888248	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14634	chr11:83532806-83538775	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83527800-83539200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83535000-83538800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83535000-83546600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:83535400-83539000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83535600-83538800	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:83536600-83538400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:83537200-83538400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:83537400-83539200	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83537800-83538400	Enhancers	Osteobl	bone
10	chr11:83537800-83538600	Enhancers	NH-A	brain
11	chr11:83537800-83538800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:83537800-83539800	Enhancers	NHDF-Ad	bronchial
13	chr11:83538000-83538600	Enhancers	NHLF	lung
14	chr11:83538000-83538800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:83538000-83539200	Enhancers	Brain Anterior Caudate	brain
16	chr11:83538000-83539600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:83538200-83539400	Enhancers	HSMM	muscle

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