Variant report

Variant	rs1516624
Chromosome Location	chr11:83546399-83546400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10792693	0.87[EUR][1000 genomes]
rs1113082	0.83[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11233755	0.96[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1155448	0.80[EUR][1000 genomes]
rs11820522	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs12799838	0.87[EUR][1000 genomes]
rs1400310	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1451393	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs1516617	0.92[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1516618	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1516622	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1516623	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs1961555	0.88[EUR][1000 genomes]
rs2040310	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040311	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040312	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3851171	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3862775	0.84[EUR][1000 genomes]
rs3862776	0.85[EUR][1000 genomes]
rs4117186	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4362168	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs4396309	0.88[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4480568	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592143	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs6592144	0.89[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs6592145	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs6592148	0.89[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7107629	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122007	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs7124506	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7130803	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7483854	0.87[EUR][1000 genomes]
rs7937553	0.86[EUR][1000 genomes]
rs7941665	0.96[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7946278	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7946494	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7947211	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83535000-83546600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:83544200-83548000	Weak transcription	Aorta	Aorta
3	chr11:83545400-83548600	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:83545400-83548800	Enhancers	Brain Angular Gyrus	brain
5	chr11:83545400-83549600	Enhancers	Brain Anterior Caudate	brain
6	chr11:83545400-83550000	Enhancers	Brain Hippocampus Middle	brain
7	chr11:83545400-83550200	Enhancers	Brain Substantia Nigra	brain
8	chr11:83545600-83548200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:83545600-83549200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:83545800-83548200	Enhancers	Stomach Mucosa	stomach
11	chr11:83546000-83548600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:83546000-83550200	Enhancers	Liver	Liver
13	chr11:83546200-83546600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:83546200-83546800	Enhancers	Rectal Smooth Muscle	rectum
15	chr11:83546200-83547000	Enhancers	Colon Smooth Muscle	Colon
16	chr11:83546200-83547400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:83546200-83548200	Enhancers	Stomach Smooth Muscle	stomach
18	chr11:83546200-83550000	Enhancers	HepG2	liver

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