Variant report

Variant	rs7937553
Chromosome Location	chr11:83517512-83517513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10792693	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1113082	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11233749	0.85[AMR][1000 genomes]
rs11233755	0.86[EUR][1000 genomes]
rs11820522	0.81[AMR][1000 genomes]
rs12283621	0.84[EUR][1000 genomes]
rs12794931	0.81[AMR][1000 genomes]
rs12799838	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1400310	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1451391	0.85[EUR][1000 genomes]
rs1451392	0.86[EUR][1000 genomes]
rs1451393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1516617	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1516618	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1516622	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1516624	0.86[EUR][1000 genomes]
rs1961555	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2040310	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2040311	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2040312	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3851171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3862775	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3862776	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4117186	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4362168	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4396309	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4480568	0.85[EUR][1000 genomes]
rs6592143	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592144	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6592148	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7107629	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7122007	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7124506	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7130803	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs715858	0.86[EUR][1000 genomes]
rs7483854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7937829	0.89[EUR][1000 genomes]
rs7941665	0.86[EUR][1000 genomes]
rs7946278	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7946494	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7947211	0.88[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83514400-83518000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83514800-83518400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83514800-83518800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:83515000-83518600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:83515200-83518200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83515200-83518800	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83515400-83519000	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:83517200-83518800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:83517200-83526400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:83517400-83517600	Enhancers	Colon Smooth Muscle	Colon

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