Variant report

Variant	rs7124506
Chromosome Location	chr11:83549797-83549798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10792693	0.88[EUR][1000 genomes]
rs1113082	0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs11233755	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1155448	0.81[EUR][1000 genomes]
rs11820522	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs12794931	0.80[EUR][1000 genomes]
rs12799838	0.88[EUR][1000 genomes]
rs1400310	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1451393	0.88[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1516617	0.92[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1516618	0.92[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1516622	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1516623	0.92[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs1516624	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1961555	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2040310	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2040311	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2040312	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3851171	0.88[EUR][1000 genomes]
rs3862775	0.85[EUR][1000 genomes]
rs3862776	0.84[EUR][1000 genomes]
rs4117186	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4362168	0.88[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs4396309	0.88[CEU][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs4480568	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592143	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs6592144	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs6592145	0.84[CEU][hapmap]
rs6592148	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7107629	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122007	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs7130803	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7483854	0.88[EUR][1000 genomes]
rs7937553	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7941665	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7946278	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7946494	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947211	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83545400-83550000	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83545400-83550200	Enhancers	Brain Substantia Nigra	brain
3	chr11:83546000-83550200	Enhancers	Liver	Liver
4	chr11:83546200-83550000	Enhancers	HepG2	liver
5	chr11:83549200-83549800	Enhancers	Brain Angular Gyrus	brain
6	chr11:83549200-83557200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83549400-83550000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:83549600-83549800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:83549600-83550000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:83549600-83550200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:83549600-83550200	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:83549600-83551000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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