Variant report

Variant	rs1516622
Chromosome Location	chr11:83531646-83531647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83527114..83529633-chr11:83531470..83533535,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10792693	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1113082	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11233755	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1155448	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11820522	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12794931	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12799838	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1400310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1451392	0.87[TSI][hapmap]
rs1451393	0.88[CEU][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1516617	0.91[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1516618	0.92[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1516623	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1516624	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1961555	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2040310	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2040311	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2040312	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3851171	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3862775	0.87[EUR][1000 genomes]
rs3862776	0.86[EUR][1000 genomes]
rs4117186	1.00[ASW][hapmap];0.96[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4362168	0.88[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4396309	0.88[CEU][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4480568	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592143	0.84[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6592144	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592145	0.84[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6592148	0.88[CEU][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs7107629	0.89[EUR][1000 genomes]
rs7122007	0.87[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7124506	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7130803	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs715858	0.87[TSI][hapmap]
rs7483854	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7937553	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7937829	0.83[EUR][1000 genomes]
rs7941665	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7946278	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7946494	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7947211	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83526800-83534600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:83527600-83532600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83527800-83539200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:83529600-83534600	Weak transcription	NH-A	brain
5	chr11:83529800-83537800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:83530200-83534600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:83531000-83534800	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:83531000-83536800	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83531200-83532200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:83531600-83532200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:83531600-83534800	Weak transcription	Brain Cingulate Gyrus	brain

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