Variant report

Variant	rs715858
Chromosome Location	chr11:83489024-83489025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83488003..83489817-chr11:83489968..83492416,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10792693	0.86[EUR][1000 genomes]
rs1113082	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs1155311	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1155312	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1226063	1.00[YRI][hapmap]
rs12283621	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12799838	0.86[EUR][1000 genomes]
rs1400310	0.80[EUR][1000 genomes]
rs1451391	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1451392	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1451393	0.84[CEU][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs1516617	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1516618	0.82[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1516622	0.87[TSI][hapmap]
rs1961555	0.85[EUR][1000 genomes]
rs2040310	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs2040311	0.82[EUR][1000 genomes]
rs2040312	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs3851171	0.86[EUR][1000 genomes]
rs3862775	0.85[EUR][1000 genomes]
rs3862776	0.84[EUR][1000 genomes]
rs4117186	0.87[TSI][hapmap];1.00[YRI][hapmap]
rs4362168	0.83[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs4396309	0.84[CEU][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs6592143	0.85[EUR][1000 genomes]
rs6592144	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs6592147	1.00[YRI][hapmap]
rs6592148	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs7107629	0.82[EUR][1000 genomes]
rs7122007	0.83[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs7130803	0.83[EUR][1000 genomes]
rs7483854	0.86[EUR][1000 genomes]
rs7937553	0.86[EUR][1000 genomes]
rs7937829	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7946278	0.85[EUR][1000 genomes]
rs7946494	0.92[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs9888248	1.00[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs715858	ABCB8	trans	parietal	SCAN
rs715858	EED	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83482200-83489400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:83485800-83490600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:83486000-83489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:83486200-83489200	Weak transcription	NHEK	skin
5	chr11:83486200-83489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:83488000-83490400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83488000-83491000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83488000-83491200	Weak transcription	Brain Substantia Nigra	brain
9	chr11:83488200-83491000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83489000-83489200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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