Variant report

Variant	rs7947211
Chromosome Location	chr11:83546816-83546817
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10792693	0.88[EUR][1000 genomes]
rs1113082	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11233755	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1155448	0.82[EUR][1000 genomes]
rs11820522	0.82[EUR][1000 genomes]
rs12794931	0.82[EUR][1000 genomes]
rs12799838	0.88[EUR][1000 genomes]
rs1400310	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1451393	0.87[EUR][1000 genomes]
rs1516617	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1516618	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1516622	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1516623	0.83[EUR][1000 genomes]
rs1516624	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1961555	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2040310	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040311	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040312	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3851171	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3862775	0.86[EUR][1000 genomes]
rs3862776	0.85[EUR][1000 genomes]
rs4117186	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4362168	0.87[EUR][1000 genomes]
rs4396309	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4480568	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592143	0.87[EUR][1000 genomes]
rs6592144	0.89[EUR][1000 genomes]
rs6592148	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7107629	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122007	0.89[EUR][1000 genomes]
rs7124506	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7130803	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7483854	0.88[EUR][1000 genomes]
rs7937553	0.88[EUR][1000 genomes]
rs7937829	0.82[EUR][1000 genomes]
rs7941665	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7946278	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7946494	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83544200-83548000	Weak transcription	Aorta	Aorta
2	chr11:83545400-83548600	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83545400-83548800	Enhancers	Brain Angular Gyrus	brain
4	chr11:83545400-83549600	Enhancers	Brain Anterior Caudate	brain
5	chr11:83545400-83550000	Enhancers	Brain Hippocampus Middle	brain
6	chr11:83545400-83550200	Enhancers	Brain Substantia Nigra	brain
7	chr11:83545600-83548200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:83545600-83549200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:83545800-83548200	Enhancers	Stomach Mucosa	stomach
10	chr11:83546000-83548600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:83546000-83550200	Enhancers	Liver	Liver
12	chr11:83546200-83547000	Enhancers	Colon Smooth Muscle	Colon
13	chr11:83546200-83547400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:83546200-83548200	Enhancers	Stomach Smooth Muscle	stomach
15	chr11:83546200-83550000	Enhancers	HepG2	liver
16	chr11:83546400-83547200	Enhancers	GM12878-XiMat	blood
17	chr11:83546400-83548200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr11:83546600-83547000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:83546600-83547400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:83546800-83549400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:83546800-83549600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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