Variant report

Variant	rs1516623
Chromosome Location	chr11:83532889-83532890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83527114..83529633-chr11:83531470..83533535,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1113082	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11233755	0.87[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1155448	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11820522	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12794931	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1400310	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1451393	0.86[JPT][hapmap];0.96[MEX][hapmap]
rs1516617	0.83[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1516618	0.83[CEU][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1516622	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1516624	0.82[EUR][1000 genomes]
rs2040310	0.87[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2040311	0.82[ASN][1000 genomes]
rs2040312	0.87[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4117186	0.88[CEU][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4362168	0.95[JPT][hapmap]
rs4396309	0.90[JPT][hapmap];0.91[MEX][hapmap]
rs4480568	0.90[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592143	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs6592144	0.86[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6592145	0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6592148	0.81[JPT][hapmap]
rs7122007	0.85[JPT][hapmap]
rs7124506	0.92[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs7130803	0.87[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7941665	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7946494	0.87[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs7947211	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14634	chr11:83532806-83538775	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83526800-83534600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:83527800-83539200	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83529600-83534600	Weak transcription	NH-A	brain
4	chr11:83529800-83537800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:83530200-83534600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:83531000-83534800	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:83531000-83536800	Weak transcription	Brain Substantia Nigra	brain
8	chr11:83531600-83534800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:83532200-83534600	Weak transcription	Brain Inferior Temporal Lobe	brain

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