Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:83526446-83527996	SK-N-MC	brain:	n/a	n/a
2	POLR2A	chr11:83526433-83527530	SK-N-MC	brain:	n/a	n/a
3	SMC3	chr11:83526469-83528039	Hela-S3	cervix:	n/a	chr11:83527817-83527831

Variant related genes	Relation type
LDHAL6DP	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1113082	0.86[ASN][1000 genomes]
rs11233755	0.89[ASN][1000 genomes]
rs11820522	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794931	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400310	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1516617	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1516618	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1516622	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1516623	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1516624	0.80[EUR][1000 genomes]
rs2040310	0.83[ASN][1000 genomes]
rs2040311	0.82[ASN][1000 genomes]
rs2040312	0.82[ASN][1000 genomes]
rs4117186	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4480568	0.93[ASN][1000 genomes]
rs6592143	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6592144	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6592145	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124506	0.81[EUR][1000 genomes]
rs7130803	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7941665	0.89[ASN][1000 genomes]
rs7946494	0.83[ASN][1000 genomes]
rs7947211	0.82[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83519600-83526600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:83523800-83527800	Enhancers	Brain Hippocampus Middle	brain
3	chr11:83524200-83527600	Enhancers	Brain Substantia Nigra	brain
4	chr11:83524800-83526800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:83525600-83527800	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:83525800-83527800	Enhancers	Brain Angular Gyrus	brain
7	chr11:83525800-83527800	Enhancers	Brain Anterior Caudate	brain
8	chr11:83526000-83530200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:83526200-83527600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:83526200-83527800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:83526200-83528000	Enhancers	Hela-S3	cervix
12	chr11:83526400-83526800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:83526400-83527000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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