Variant report

Variant	rs983590
Chromosome Location	chr11:83358629-83358630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD42-3	chr11:83358547-83358637	ENSG00000255311.1
2	lnc-ANKRD42-3	chr11:83358547-83358637	ENSG00000255311.1
3	lnc-ANKRD42-3	chr11:83358547-83358637	ENSG00000255311.1
4	lnc-ANKRD42-3	chr11:83358547-83358637	ENSG00000255311.1

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11233697	0.83[CHD][hapmap]
rs11233703	0.82[JPT][hapmap]
rs11233705	0.82[JPT][hapmap]
rs11233711	0.84[CEU][hapmap]
rs12273560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12273967	1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12275022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12275254	0.82[JPT][hapmap]
rs12278831	0.83[CHD][hapmap]
rs12282021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1367980	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17545474	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2060147	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2116477	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2374447	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4143852	0.82[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs4480567	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs536489	0.82[JPT][hapmap]
rs58847848	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs609948	0.82[JPT][hapmap]
rs616414	0.82[JPT][hapmap]
rs617335	0.82[JPT][hapmap]
rs650206	0.85[MEX][hapmap]
rs7105588	0.82[JPT][hapmap]
rs7125165	0.92[MEX][hapmap]
rs7131460	0.82[JPT][hapmap]
rs725192	0.80[EUR][1000 genomes]
rs7949429	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9734327	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs983589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs984759	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs984760	0.88[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83355200-83359200	Weak transcription	Hela-S3	cervix
2	chr11:83357400-83360400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83357600-83359400	Enhancers	Brain Anterior Caudate	brain
4	chr11:83358000-83360400	Weak transcription	Fetal Brain Male	brain

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