Variant report

Variant	rs650206
Chromosome Location	chr11:83371215-83371216
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83371140..83373145-chr17:57916540..57918040,2	MCF-7	breast:
2	chr11:83371070..83373099-chr11:83374916..83376887,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11233708	0.96[CEU][hapmap];0.94[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs11233709	0.91[EUR][1000 genomes]
rs11233714	0.96[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12098926	0.92[ASN][1000 genomes]
rs12223386	0.90[EUR][1000 genomes]
rs12226177	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12273967	0.85[MEX][hapmap]
rs12275254	0.86[MEX][hapmap]
rs1367980	0.85[MEX][hapmap]
rs1868892	0.80[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2060147	0.85[MEX][hapmap]
rs2443455	0.81[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4480567	0.85[MEX][hapmap]
rs587103	0.92[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs604787	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs616414	0.93[MEX][hapmap];0.83[TSI][hapmap]
rs617859	0.90[EUR][1000 genomes]
rs641737	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs645596	0.81[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap]
rs6592137	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592138	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs668025	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs688414	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7105588	0.93[MEX][hapmap]
rs7109939	0.91[EUR][1000 genomes]
rs7125165	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7131460	0.86[MEX][hapmap]
rs7927393	0.89[ASN][1000 genomes]
rs7928379	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.84[ASN][1000 genomes]
rs7946175	0.84[ASN][1000 genomes]
rs7952084	0.88[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.93[ASN][1000 genomes]
rs983590	0.85[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs650206	C11orf82	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83361000-83372000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:83367200-83373600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83367200-83373600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83367600-83372800	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83368000-83372600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:83368200-83373400	Weak transcription	Fetal Brain Male	brain
7	chr11:83368400-83372800	Weak transcription	Fetal Heart	heart
8	chr11:83369800-83372000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:83370000-83372800	Weak transcription	Fetal Intestine Large	intestine
10	chr11:83370000-83373000	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:83370200-83372600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:83370200-83372600	Weak transcription	Fetal Intestine Small	intestine

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