Variant report

Variant	rs668025
Chromosome Location	chr11:83377446-83377447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11233708	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233709	0.91[ASN][1000 genomes]
rs11233714	0.81[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12098926	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12223386	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12226177	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1868892	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2443455	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs587103	0.88[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs604276	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs604787	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs617859	0.90[ASN][1000 genomes]
rs633338	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs641737	0.94[ASN][1000 genomes]
rs645596	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs650206	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6592137	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592138	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7106608	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7109939	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7125165	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7927393	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7928379	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946175	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952084	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83374000-83379200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83374000-83386600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83374000-83387000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:83374600-83378600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:83374600-83387200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83374800-83379200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83374800-83392000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:83375400-83378400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:83375600-83378400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:83375600-83379200	Weak transcription	Brain Substantia Nigra	brain
11	chr11:83375600-83384400	Weak transcription	Fetal Heart	heart
12	chr11:83376000-83379200	Weak transcription	Fetal Brain Male	brain
13	chr11:83377000-83377600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:83377000-83377600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr11:83377200-83377600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:83377200-83377800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:83377400-83377600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:83377400-83378000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:83377400-83378200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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