Variant report

Variant	rs2443455
Chromosome Location	chr11:83393850-83393851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr11:83390036-83394189	H1-neurons	neurons:	n/a	chr11:83393604-83393622 chr11:83390949-83390957
2	TBL1XR1	chr11:83393507-83393899	GM12878	blood:	n/a	n/a
3	POU2F2	chr11:83393509-83394001	GM12891	blood:	n/a	chr11:83393720-83393733
4	TEAD4	chr11:83393615-83394124	K562	blood:	n/a	n/a
5	TEAD4	chr11:83393649-83394122	K562	blood:	n/a	n/a
6	BHLHE40	chr11:83393644-83393946	GM12878	blood:	n/a	n/a
7	CEBPD	chr11:83393681-83394074	K562	blood:	n/a	n/a
8	POLR2A	chr11:83392055-83394020	H1-neurons	neurons:	n/a	n/a
9	RCOR1	chr11:83393726-83394053	K562	blood:	n/a	n/a
10	TAF1	chr11:83393576-83393941	GM12878	blood:	n/a	n/a
11	NR2F2	chr11:83393776-83394019	K562	blood:	n/a	n/a
12	POLR2A	chr11:83391902-83394050	H1-neurons	neurons:	n/a	n/a
13	PRDM1	chr11:83393610-83393943	Hela-S3	cervix:	n/a	chr11:83393751-83393766
14	GATA2	chr11:83393719-83394055	K562	blood:	n/a	n/a
15	CEBPD	chr11:83393667-83394064	K562	blood:	n/a	n/a
16	PML	chr11:83393735-83393998	K562	blood:	n/a	n/a
17	TAL1	chr11:83393688-83394092	K562	blood:	n/a	n/a
18	TAF1	chr11:83392113-83393972	H1-neurons	neurons:	n/a	n/a
19	POU2F2	chr11:83393478-83393940	GM12891	blood:	n/a	chr11:83393720-83393733
20	TCF7L2	chr11:83392235-83393950	Hela-S3	cervix:	n/a	chr11:83393033-83393047

Variant related genes	Relation type
DLG2	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10898152	0.81[GIH][hapmap]
rs11233708	0.84[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];0.90[ASN][1000 genomes]
rs11233709	0.91[ASN][1000 genomes]
rs11233714	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs11233731	0.81[GIH][hapmap]
rs12098926	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12223386	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12226177	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12275254	0.88[MEX][hapmap]
rs1868892	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587103	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs604276	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs604787	0.93[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.88[TSI][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs616414	0.82[MEX][hapmap]
rs617859	0.92[ASN][1000 genomes]
rs633338	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs641737	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs645596	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs650206	0.81[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs6592137	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs6592138	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs668025	0.96[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs688414	0.80[ASN][1000 genomes]
rs7105588	0.82[MEX][hapmap]
rs7106608	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109939	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7125165	0.81[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7131460	0.88[MEX][hapmap]
rs7927393	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7928379	0.93[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7946175	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952084	0.86[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs983589	0.82[MEX][hapmap]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83390800-83394400	Enhancers	Fetal Heart	heart
2	chr11:83390800-83395600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83391200-83395400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:83391400-83394000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:83391400-83394000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:83391800-83394000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:83392000-83394000	Flanking Active TSS	GM12878-XiMat	blood
8	chr11:83392200-83394000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:83392400-83394200	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:83393000-83403800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:83393200-83394600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:83393200-83395000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:83393400-83394000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:83393400-83394000	Flanking Active TSS	Fetal Brain Male	brain
15	chr11:83393400-83394200	Enhancers	Gastric	stomach
16	chr11:83393400-83394200	Enhancers	Left Ventricle	heart
17	chr11:83393400-83395000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:83393600-83394000	Enhancers	Brain Germinal Matrix	brain
19	chr11:83393600-83394000	Bivalent Enhancer	Fetal Intestine Small	intestine
20	chr11:83393600-83394200	Enhancers	Brain Hippocampus Middle	brain
21	chr11:83393600-83398800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:83393600-83402400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:83393600-83402400	Weak transcription	Pancreas	Pancrea
24	chr11:83393800-83394000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr11:83393800-83394000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr11:83393800-83394000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr11:83393800-83394000	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr11:83393800-83394200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:83393800-83394200	Enhancers	Fetal Brain Female	brain
30	chr11:83393800-83394400	Enhancers	Brain Anterior Caudate	brain
31	chr11:83393800-83394400	Enhancers	Brain Cingulate Gyrus	brain
32	chr11:83393800-83394400	Enhancers	Brain Substantia Nigra	brain
33	chr11:83393800-83398800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:83393800-83401800	Weak transcription	Brain Angular Gyrus	brain

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