Variant report

Variant	rs7105588
Chromosome Location	chr11:83344753-83344754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83343059..83345662-chr11:83356334..83358381,2	K562	blood:
2	chr11:83344162..83347018-chr11:83356334..83358797,2	K562	blood:

Variant related genes	Relation type
ENSG00000255311	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11233703	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233704	0.96[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233705	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11233708	1.00[MEX][hapmap];0.86[TSI][hapmap]
rs12273560	0.82[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs12273967	0.82[JPT][hapmap]
rs12275022	0.82[JPT][hapmap];0.85[YRI][hapmap]
rs12275254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282021	0.82[JPT][hapmap]
rs1367980	1.00[ASW][hapmap];0.82[JPT][hapmap];0.89[LWK][hapmap];0.93[MEX][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs17467404	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17545474	0.82[JPT][hapmap];0.86[MEX][hapmap]
rs2060147	0.94[ASW][hapmap];0.82[JPT][hapmap];0.89[LWK][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2116477	0.94[AFR][1000 genomes]
rs2374447	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs2443455	0.82[MEX][hapmap]
rs4143852	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4480567	1.00[ASW][hapmap];0.82[JPT][hapmap];0.89[LWK][hapmap];0.93[MEX][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs536489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs604787	0.82[MEX][hapmap]
rs609948	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs616414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs617335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs645596	0.93[MEX][hapmap]
rs650206	0.93[MEX][hapmap]
rs66758862	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67079375	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7125165	0.86[MEX][hapmap];0.81[TSI][hapmap]
rs7131460	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9734327	0.82[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes]
rs983589	0.82[JPT][hapmap];0.86[MEX][hapmap]
rs983590	0.82[JPT][hapmap]
rs984760	0.90[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7105588	REC8	trans	lymphoblastoid	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83341000-83357200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83341400-83353200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83341800-83349600	Weak transcription	Hela-S3	cervix
4	chr11:83341800-83352600	Weak transcription	Left Ventricle	heart
5	chr11:83342000-83346000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83342000-83346600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:83344600-83348800	Enhancers	Fetal Brain Male	brain

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