Variant report

Variant	rs536489
Chromosome Location	chr11:83358052-83358053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD42-3	chr11:83357645-83358133	ENSG00000255311.1
2	lnc-ANKRD42-3	chr11:83358047-83358133	ENSG00000255311.1

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11233703	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233704	0.96[CEU][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11233705	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12273560	0.82[JPT][hapmap]
rs12273967	0.82[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12275022	0.82[JPT][hapmap]
rs12275254	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12282021	0.82[JPT][hapmap]
rs1367980	0.82[JPT][hapmap]
rs17467404	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17545474	0.82[JPT][hapmap]
rs2060147	0.82[JPT][hapmap]
rs2374447	0.82[JPT][hapmap]
rs4143852	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4480567	0.82[JPT][hapmap]
rs609948	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs616414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs617335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6592137	0.83[AMR][1000 genomes]
rs6592138	0.82[AMR][1000 genomes]
rs66758862	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67079375	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7105588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7109939	0.81[AMR][1000 genomes]
rs7131460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9734327	0.82[JPT][hapmap]
rs983589	0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs983590	0.82[JPT][hapmap]
rs984760	0.90[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83355200-83359200	Weak transcription	Hela-S3	cervix
2	chr11:83357200-83358200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:83357400-83360400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:83357600-83359400	Enhancers	Brain Anterior Caudate	brain
5	chr11:83358000-83360400	Weak transcription	Fetal Brain Male	brain

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