Variant report

Variant	rs609948
Chromosome Location	chr11:83357100-83357101
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:83356995-83357118	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000255311	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11233703	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233704	0.96[CEU][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11233705	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273560	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs12273967	0.82[JPT][hapmap]
rs12275022	0.82[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs12275254	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12282021	0.82[JPT][hapmap]
rs1367980	0.82[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs17467404	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17545474	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2060147	0.82[JPT][hapmap];0.85[YRI][hapmap]
rs2374447	0.82[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs4143852	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4480567	0.82[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs536489	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs616414	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs617335	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66758862	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67079375	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7105588	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7131460	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9734327	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs983589	0.82[JPT][hapmap]
rs983590	0.82[JPT][hapmap]
rs984760	0.90[JPT][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83341000-83357200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83352000-83357200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:83353000-83357600	Weak transcription	Fetal Brain Male	brain
4	chr11:83353200-83357200	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83353800-83357600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:83355200-83359200	Weak transcription	Hela-S3	cervix

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