Variant report

Variant	rs4143852
Chromosome Location	chr11:83351780-83351781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:83351443-83351811	Hela-S3	cervix:	n/a	chr11:83351623-83351634
2	POLR2A	chr11:83351044-83351810	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000255311	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11233703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11233704	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11233705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12273560	0.82[JPT][hapmap]
rs12273967	0.82[JPT][hapmap]
rs12275022	0.82[JPT][hapmap]
rs12275254	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12282021	0.82[JPT][hapmap]
rs1367980	0.82[JPT][hapmap]
rs17467404	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545474	0.82[JPT][hapmap];0.82[YRI][hapmap]
rs2060147	0.82[JPT][hapmap]
rs2374447	0.82[JPT][hapmap]
rs4480567	0.82[JPT][hapmap]
rs536489	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs609948	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs616414	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs617335	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66758862	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67079375	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7105588	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7131460	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9734327	0.82[JPT][hapmap]
rs983589	0.82[JPT][hapmap]
rs983590	0.82[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs984760	0.90[JPT][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83341000-83357200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83341400-83353200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83341800-83352600	Weak transcription	Left Ventricle	heart
4	chr11:83348000-83352600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83348000-83352600	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:83349800-83352800	Weak transcription	Right Atrium	heart
7	chr11:83350400-83352600	Weak transcription	Psoas Muscle	Psoas
8	chr11:83351000-83353400	Enhancers	Fetal Heart	heart
9	chr11:83351200-83351800	Enhancers	Fetal Brain Female	brain
10	chr11:83351200-83352000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:83351200-83352600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:83351200-83355200	Enhancers	Hela-S3	cervix
13	chr11:83351400-83352600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:83351400-83352600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:83351400-83353000	Enhancers	Fetal Brain Male	brain
16	chr11:83351600-83352000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr11:83351600-83352600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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