Variant report

Variant	rs6592138
Chromosome Location	chr11:83373360-83373361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83372096..83374339-chr11:83379207..83380733,2	K562	blood:
2	chr11:83372839..83375569-chr11:83379233..83381107,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11233708	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11233709	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11233714	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12098926	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12223386	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12226177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275254	0.81[AMR][1000 genomes]
rs17467404	0.81[AMR][1000 genomes]
rs1868892	0.85[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2443455	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs536489	0.82[AMR][1000 genomes]
rs587103	0.96[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs604276	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs604787	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs617859	0.91[EUR][1000 genomes]
rs641737	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs645596	0.84[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs650206	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668025	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs688414	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7106608	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7109939	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7125165	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927393	0.91[ASN][1000 genomes]
rs7928379	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7946175	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7952084	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83367200-83373600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83367200-83373600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83368200-83373400	Weak transcription	Fetal Brain Male	brain
4	chr11:83372000-83375000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:83372200-83376400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:83372600-83373400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:83372600-83373400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:83372600-83373400	Enhancers	Fetal Intestine Small	intestine
9	chr11:83372600-83374000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:83372600-83374000	Enhancers	Brain Anterior Caudate	brain
11	chr11:83372600-83374200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr11:83372600-83374600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:83372600-83374600	Enhancers	Liver	Liver
14	chr11:83372600-83374800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:83372800-83373400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr11:83372800-83373400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:83372800-83373600	Enhancers	Fetal Intestine Large	intestine
18	chr11:83372800-83374000	Enhancers	Brain Angular Gyrus	brain
19	chr11:83372800-83374000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:83372800-83374600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:83372800-83374800	Enhancers	HMEC	breast
22	chr11:83372800-83375000	Enhancers	HepG2	liver
23	chr11:83372800-83375600	Enhancers	Fetal Heart	heart
24	chr11:83373000-83374200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:83373000-83374800	Enhancers	Brain Hippocampus Middle	brain
26	chr11:83373200-83373600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:83373200-83374800	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:83373200-83374800	Enhancers	Right Atrium	heart

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