Variant report

Variant	rs7928379
Chromosome Location	chr11:83378066-83378067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11233708	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs11233709	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11233714	0.84[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs12098926	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12223386	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12226177	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12273967	0.86[MEX][hapmap]
rs12275254	0.87[MEX][hapmap]
rs1868892	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2443455	0.93[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs587103	0.83[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs604276	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs604787	1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MEX][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs616414	0.93[MEX][hapmap]
rs617859	0.90[ASN][1000 genomes]
rs633338	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs641737	0.94[ASN][1000 genomes]
rs645596	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs650206	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.84[ASN][1000 genomes]
rs6592137	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6592138	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs668025	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106608	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7109939	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7125165	0.88[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.84[ASN][1000 genomes]
rs7131460	0.87[MEX][hapmap]
rs7927393	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7946175	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952084	0.93[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83374000-83379200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83374000-83386600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83374000-83387000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:83374600-83378600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:83374600-83387200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83374800-83379200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83374800-83392000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:83375400-83378400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:83375600-83378400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:83375600-83379200	Weak transcription	Brain Substantia Nigra	brain
11	chr11:83375600-83384400	Weak transcription	Fetal Heart	heart
12	chr11:83376000-83379200	Weak transcription	Fetal Brain Male	brain
13	chr11:83377400-83378200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:83378000-83390800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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