Variant report

Variant	rs7170216
Chromosome Location	chr15:44863403-44863404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44857346..44860002-chr15:44863192..44864823,2	K562	blood:
2	chr15:44862426..44865796-chr15:44866440..44868950,5	K562	blood:
3	chr15:44863301..44864975-chr15:45050931..45052977,2	K562	blood:

Variant related genes	Relation type
ENSG00000104133	Chromatin interaction
ENSG00000185880	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16964045	1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs2288340	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2291647	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2412884	1.00[ASN][1000 genomes]
rs3752690	0.88[JPT][hapmap]
rs3784568	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7172726	0.95[ASN][1000 genomes]
rs7173921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7175978	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7176018	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8027065	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs8037681	1.00[ASN][1000 genomes]
rs8041448	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv827313	chr15:44857356-44863482	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44843200-44867800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:44843200-44868000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:44843600-44866000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:44843800-44867600	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr15:44844000-44866400	Strong transcription	Placenta	Placenta
7	chr15:44844000-44867600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:44844000-44867600	Strong transcription	Fetal Muscle Trunk	muscle
9	chr15:44844000-44868200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:44844000-44870400	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:44844600-44867400	Strong transcription	Stomach Smooth Muscle	stomach
12	chr15:44844600-44867600	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr15:44845600-44865800	Strong transcription	Osteobl	bone
14	chr15:44848400-44868200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr15:44850600-44863800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:44850600-44863800	Strong transcription	NHEK	skin
17	chr15:44853200-44867400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:44853600-44867400	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:44855000-44867000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:44855000-44867600	Strong transcription	Primary T cells from cord blood	blood
21	chr15:44855200-44863800	Strong transcription	Gastric	stomach
22	chr15:44855600-44863600	Strong transcription	Spleen	Spleen
23	chr15:44856000-44863600	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:44857600-44867400	Strong transcription	Dnd41	blood
25	chr15:44857800-44866200	Strong transcription	Brain Angular Gyrus	brain
26	chr15:44857800-44867000	Weak transcription	Right Atrium	heart
27	chr15:44857800-44867600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:44857800-44867600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:44857800-44867800	Strong transcription	Fetal Intestine Large	intestine
30	chr15:44858000-44863600	Strong transcription	Adipose Nuclei	Adipose
31	chr15:44858000-44864600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:44858000-44865600	Strong transcription	Fetal Muscle Leg	muscle
33	chr15:44858000-44867200	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:44858000-44867600	Strong transcription	Liver	Liver
35	chr15:44858000-44868200	Strong transcription	Duodenum Mucosa	Duodenum
36	chr15:44858000-44900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr15:44858200-44863600	Strong transcription	Aorta	Aorta
38	chr15:44858200-44863600	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr15:44858200-44865800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:44858200-44867200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:44858200-44869600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:44858400-44863800	Strong transcription	Lung	lung
43	chr15:44858400-44863800	Strong transcription	Thymus	Thymus
44	chr15:44858400-44867200	Strong transcription	Primary B cells from cord blood	blood
45	chr15:44858400-44867600	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:44858400-44867600	Strong transcription	GM12878-XiMat	blood
47	chr15:44858400-44867800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:44858400-44868000	Strong transcription	Primary B cells from peripheral blood	blood
49	chr15:44858400-44870200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr15:44858400-44897200	Strong transcription	Fetal Stomach	stomach

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