Variant report

Variant	rs8027065
Chromosome Location	chr15:44808517-44808518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44719413..44722163-chr15:44807893..44809754,2	K562	blood:

Variant related genes	Relation type
ENSG00000137770	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2291647	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs3784568	1.00[ASW][hapmap]
rs7170216	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs7172726	1.00[AFR][1000 genomes]
rs8035541	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
7	nsv904180	chr15:44783700-44820054	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv569301	chr15:44797575-44814968	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44721000-44828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:44740600-44824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44750000-44827400	Weak transcription	Pancreas	Pancrea
4	chr15:44750200-44828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:44754600-44816200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:44757000-44827400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:44775800-44820200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:44778000-44827800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:44778000-44827800	Weak transcription	Psoas Muscle	Psoas
10	chr15:44779800-44813600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:44779800-44824200	Weak transcription	Gastric	stomach
12	chr15:44779800-44827800	Weak transcription	Aorta	Aorta
13	chr15:44783200-44819400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr15:44783200-44827800	Weak transcription	NHLF	lung
15	chr15:44783600-44828000	Weak transcription	HSMMtube	muscle
16	chr15:44783800-44816400	Weak transcription	HMEC	breast
17	chr15:44790400-44827200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:44790800-44813600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:44790800-44827800	Weak transcription	Small Intestine	intestine
20	chr15:44791000-44812000	Weak transcription	Colonic Mucosa	Colon
21	chr15:44791000-44818600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:44791800-44826800	Weak transcription	Brain Germinal Matrix	brain
23	chr15:44795000-44820400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr15:44795200-44820200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:44795400-44809200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:44796000-44812400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:44796200-44811400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr15:44796200-44812600	Weak transcription	NH-A	brain
29	chr15:44796200-44813000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:44796200-44815200	Weak transcription	Right Ventricle	heart
31	chr15:44796200-44819000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:44796200-44827200	Weak transcription	K562	blood
33	chr15:44796200-44827800	Weak transcription	Brain Anterior Caudate	brain
34	chr15:44796200-44828000	Weak transcription	Brain Substantia Nigra	brain
35	chr15:44796400-44814200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:44796400-44814200	Weak transcription	NHEK	skin
37	chr15:44796400-44827800	Weak transcription	Esophagus	oesophagus
38	chr15:44796400-44827800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr15:44796600-44813600	Weak transcription	Colon Smooth Muscle	Colon
40	chr15:44797000-44811000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:44797000-44815200	Weak transcription	Ovary	ovary
42	chr15:44797000-44828000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr15:44797600-44814400	Weak transcription	Left Ventricle	heart
44	chr15:44797600-44815000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr15:44797600-44815200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr15:44798000-44810800	Weak transcription	HUVEC	blood vessel
47	chr15:44798000-44815200	Weak transcription	Lung	lung
48	chr15:44798800-44812200	Weak transcription	Spleen	Spleen
49	chr15:44798800-44828000	Weak transcription	A549	lung
50	chr15:44799000-44813800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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