Variant report

Variant	rs7172726
Chromosome Location	chr15:44937590-44937591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16964045	0.93[ASN][1000 genomes]
rs2288340	0.95[ASN][1000 genomes]
rs2291647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2412884	0.95[ASN][1000 genomes]
rs3784568	0.95[ASN][1000 genomes]
rs7170216	0.95[ASN][1000 genomes]
rs7173921	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7175978	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7176018	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8027065	1.00[AFR][1000 genomes]
rs8035541	1.00[AFR][1000 genomes]
rs8037681	0.95[ASN][1000 genomes]
rs8041448	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1516	chr15:44896162-44941091	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:44890000-44954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:44897200-44939400	Weak transcription	Stomach Mucosa	stomach
6	chr15:44900600-44943400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:44900800-44955000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:44906200-44943600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:44906600-44938200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:44907000-44938400	Weak transcription	Aorta	Aorta
11	chr15:44907800-44943200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:44909400-44943600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:44909800-44938000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:44916200-44947000	Weak transcription	Esophagus	oesophagus
15	chr15:44918000-44952800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr15:44921400-44940600	Weak transcription	Fetal Brain Male	brain
17	chr15:44921600-44939800	Weak transcription	NH-A	brain
18	chr15:44921600-44943400	Weak transcription	Fetal Heart	heart
19	chr15:44922800-44938000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:44922800-44943600	Weak transcription	Gastric	stomach
21	chr15:44923000-44942400	Weak transcription	Right Ventricle	heart
22	chr15:44924200-44938600	Weak transcription	Colonic Mucosa	Colon
23	chr15:44924600-44938200	Weak transcription	HMEC	breast
24	chr15:44925400-44938000	Weak transcription	Psoas Muscle	Psoas
25	chr15:44925400-44938200	Weak transcription	Brain Substantia Nigra	brain
26	chr15:44925400-44938600	Weak transcription	Brain Angular Gyrus	brain
27	chr15:44925400-44938600	Weak transcription	NHLF	lung
28	chr15:44925400-44939200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr15:44925400-44947400	Weak transcription	HSMMtube	muscle
30	chr15:44925600-44938200	Weak transcription	Pancreas	Pancrea
31	chr15:44925600-44938400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:44925800-44938200	Weak transcription	Fetal Kidney	kidney
33	chr15:44925800-44938800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:44926000-44938400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:44926200-44938400	Weak transcription	HUVEC	blood vessel
36	chr15:44926200-44938600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:44926400-44938800	Weak transcription	NHEK	skin
38	chr15:44926400-44952800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:44928000-44938400	Weak transcription	Lung	lung
40	chr15:44928400-44938000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:44928400-44938400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:44928400-44938600	Weak transcription	Small Intestine	intestine
43	chr15:44928400-44939200	Weak transcription	Colon Smooth Muscle	Colon
44	chr15:44929800-44938400	Weak transcription	Brain Germinal Matrix	brain
45	chr15:44929800-44938400	Weak transcription	Spleen	Spleen
46	chr15:44930000-44938600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:44930000-44938600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:44930200-44938000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:44930200-44938000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr15:44930200-44938200	Weak transcription	Brain Anterior Caudate	brain

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