The 2.0 version of rSNPBase

Variant report

Variant rs7170682
Chromosome Location chr15:39876412-39876413
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:39872400-39876600 Active TSS Duodenum Mucosa Duodenum
2 chr15:39872600-39876800 Active TSS Small Intestine intestine
3 chr15:39872600-39882400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
4 chr15:39872800-39877200 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr15:39872800-39881600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
6 chr15:39873400-39879200 Transcr. at gene 5' and 3' IMR90 fetal lung fibroblasts Cell Line lung
7 chr15:39873400-39879400 Weak transcription Aorta Aorta
8 chr15:39873400-39879800 Transcr. at gene 5' and 3' NHDF-Ad bronchial
9 chr15:39873400-39880800 Transcr. at gene 5' and 3' NHLF lung
10 chr15:39873400-39881600 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr15:39873400-39884200 Transcr. at gene 5' and 3' Muscle Satellite Cultured Cells --
12 chr15:39873400-39884200 Transcr. at gene 5' and 3' HUVEC blood vessel
13 chr15:39873400-39886800 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr15:39873600-39878000 Transcr. at gene 5' and 3' NHEK skin
15 chr15:39873600-39882200 Transcr. at gene 5' and 3' Breast Myoepithelial Primary Cells Breast
16 chr15:39873600-39882200 Transcr. at gene 5' and 3' HSMM muscle
17 chr15:39873600-39884000 Transcr. at gene 5' and 3' HMEC breast
18 chr15:39873600-39884000 Transcr. at gene 5' and 3' Osteobl bone
19 chr15:39873800-39878400 Transcr. at gene 5' and 3' Duodenum Smooth Muscle Duodenum
20 chr15:39874000-39876800 Transcr. at gene 5' and 3' Colon Smooth Muscle Colon
21 chr15:39874000-39877200 Transcr. at gene 5' and 3' Fetal Stomach stomach
22 chr15:39874000-39877800 Transcr. at gene 5' and 3' hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr15:39874000-39878000 Transcr. at gene 5' and 3' Rectal Mucosa Donor 31 rectum
24 chr15:39874000-39879000 Transcr. at gene 5' and 3' Rectal Smooth Muscle rectum
25 chr15:39874000-39879400 Transcr. at gene 5' and 3' NH-A brain
26 chr15:39874000-39879800 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr15:39874200-39876600 Transcr. at gene 5' and 3' H9 Derived Neuron Cultured Cells ES cell derived
28 chr15:39874200-39876600 Transcr. at gene 5' and 3' Fetal Muscle Leg muscle
29 chr15:39874200-39876800 Weak transcription ES-WA7 Cell Line embryonic stem cell
30 chr15:39874200-39879200 Transcr. at gene 5' and 3' Rectal Mucosa Donor 29 rectum
31 chr15:39874200-39879400 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr15:39874600-39876600 Transcr. at gene 5' and 3' Ovary ovary
33 chr15:39874600-39880400 Transcr. at gene 5' and 3' Stomach Smooth Muscle stomach
34 chr15:39874600-39880400 Transcr. at gene 5' and 3' HSMMtube muscle
35 chr15:39874800-39876600 Transcr. at gene 5' and 3' Fetal Kidney kidney
36 chr15:39874800-39889200 Weak transcription Brain Substantia Nigra brain
37 chr15:39875000-39876600 Transcr. at gene 5' and 3' Adipose Nuclei Adipose
38 chr15:39875000-39889400 Weak transcription Brain Anterior Caudate brain
39 chr15:39875200-39876800 Weak transcription Brain Inferior Temporal Lobe brain
40 chr15:39875200-39876800 Weak transcription Placenta Placenta
41 chr15:39875200-39877000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
42 chr15:39875200-39880200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr15:39875200-39887800 Strong transcription H9 Cell Line embryonic stem cell
44 chr15:39875200-39888400 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
45 chr15:39875200-39889800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr15:39875400-39876800 Transcr. at gene 5' and 3' Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr15:39875400-39877600 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr15:39875400-39881200 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr15:39875400-39881400 Genic enhancers Liver Liver
50 chr15:39875400-39886000 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015