Variant report

Variant	rs7173431
Chromosome Location	chr15:41934785-41934786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12439488	0.81[AMR][1000 genomes]
rs12591253	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16971915	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34405276	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4072386	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7168386	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7173779	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8024907	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8038764	0.86[ASN][1000 genomes]
rs9788715	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9788733	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41913800-41939400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:41914200-41935800	Weak transcription	Gastric	stomach
3	chr15:41924800-41937400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:41924800-41940400	Weak transcription	Brain Substantia Nigra	brain
5	chr15:41924800-41940400	Weak transcription	Fetal Kidney	kidney
6	chr15:41925000-41935000	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:41925000-41937600	Weak transcription	Pancreas	Pancrea
8	chr15:41925000-41938000	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:41925000-41952200	Weak transcription	Ovary	ovary
10	chr15:41927000-41938800	Weak transcription	A549	lung
11	chr15:41927000-41939400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:41927000-41951800	Weak transcription	Hela-S3	cervix
13	chr15:41927200-41935600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:41927200-41939000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr15:41929800-41940400	Weak transcription	Fetal Intestine Small	intestine
16	chr15:41929800-41940800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:41930000-41939400	Weak transcription	HepG2	liver
18	chr15:41931200-41941200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:41933200-41945000	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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