Variant report

Variant	rs8024907
Chromosome Location	chr15:41921222-41921223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12439488	0.84[AMR][1000 genomes]
rs12591253	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16971915	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34405276	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34769385	0.81[EUR][1000 genomes]
rs4072386	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7168386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7173431	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7173779	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7177495	0.81[EUR][1000 genomes]
rs8038764	0.85[ASN][1000 genomes]
rs9788715	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9788733	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41913800-41939400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:41914200-41924600	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:41914200-41935800	Weak transcription	Gastric	stomach
4	chr15:41914400-41925800	Weak transcription	Lung	lung
5	chr15:41914600-41922800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:41914600-41924400	Weak transcription	Ovary	ovary
7	chr15:41914600-41924600	Weak transcription	Left Ventricle	heart
8	chr15:41915000-41921600	Weak transcription	Psoas Muscle	Psoas
9	chr15:41915000-41921600	Weak transcription	NHDF-Ad	bronchial
10	chr15:41915000-41922000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:41915000-41924200	Weak transcription	Brain Anterior Caudate	brain
12	chr15:41915000-41924600	Weak transcription	Right Atrium	heart
13	chr15:41915000-41926000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:41915000-41927400	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:41915200-41922200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:41915200-41924400	Weak transcription	Brain Substantia Nigra	brain
17	chr15:41915600-41921400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:41917400-41921600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:41917400-41922400	Weak transcription	Fetal Intestine Small	intestine
20	chr15:41917800-41926200	Weak transcription	Hela-S3	cervix
21	chr15:41921000-41921800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:41921200-41922600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links