Variant report

Variant	rs34769385
Chromosome Location	chr15:41945498-41945499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41945176..41947724-chr15:41947900..41950145,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1043627	0.81[ASN][1000 genomes]
rs1106934	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11070346	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11070349	0.82[ASN][1000 genomes]
rs11853665	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11858843	0.81[ASN][1000 genomes]
rs1197659	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1197687	0.80[ASN][1000 genomes]
rs1197688	0.81[ASN][1000 genomes]
rs1197689	0.83[ASN][1000 genomes]
rs1197690	0.84[ASN][1000 genomes]
rs1197770	0.81[EUR][1000 genomes]
rs1197773	0.84[ASN][1000 genomes]
rs1206842	0.81[ASN][1000 genomes]
rs1209333	0.84[ASN][1000 genomes]
rs12439771	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12440605	0.81[ASN][1000 genomes]
rs12591253	0.83[EUR][1000 genomes]
rs12591285	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12595271	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12901742	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1726915	0.84[ASN][1000 genomes]
rs1918312	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1918313	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2077361	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577949	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2925340	0.83[ASN][1000 genomes]
rs35033220	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35359048	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4923906	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4923907	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923913	0.83[ASN][1000 genomes]
rs4924573	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57814590	0.86[ASN][1000 genomes]
rs7168386	0.81[EUR][1000 genomes]
rs7168489	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7173779	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7177495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8024907	0.81[EUR][1000 genomes]
rs9806709	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41925000-41952200	Weak transcription	Ovary	ovary
2	chr15:41927000-41951800	Weak transcription	Hela-S3	cervix
3	chr15:41940000-41947800	Weak transcription	Dnd41	blood
4	chr15:41941000-41951400	Weak transcription	Fetal Kidney	kidney
5	chr15:41941200-41952000	Weak transcription	HSMM	muscle
6	chr15:41941600-41947200	Weak transcription	Osteobl	bone
7	chr15:41941600-41952000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:41941600-41952000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:41941800-41947600	Weak transcription	NH-A	brain
10	chr15:41943400-41946600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:41943400-41952000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:41944800-41948400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:41945200-41946800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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