Variant report

Variant	rs1043627
Chromosome Location	chr15:42119900-42119901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:114)
CpG islands
(count:61)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:114 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:42119817-42120775	GM12878	blood:	n/a	chr15:42120711-42120720
2	POLR2A	chr15:42119619-42120981	U87	brain:	n/a	n/a
3	PBX3	chr15:42119809-42120811	SK-N-SH	brain:	n/a	n/a
4	MTA3	chr15:42119349-42121169	GM12878	blood:	n/a	n/a
5	POLR2A	chr15:42119620-42121274	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:42119525-42120766	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr15:42119509-42120712	HUVEC	blood vessel:	n/a	n/a
8	CTCF	chr15:42119900-42120050	HA-sp	spinal cord:	n/a	n/a
9	MAX	chr15:42119614-42121141	NB4	blood:	n/a	chr15:42120711-42120720
10	POLR2A	chr15:42119363-42120867	PANC-1	pancreas:	n/a	n/a
11	ELF1	chr15:42119773-42120037	K562	blood:	n/a	n/a
12	TAF1	chr15:42119768-42120713	ECC-1	luminal epithelium:	n/a	n/a
13	BACH1	chr15:42119616-42119901	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr15:42119718-42120826	NB4	blood:	n/a	n/a
15	SIN3AK20	chr15:42119786-42120811	PANC-1	pancreas:	n/a	n/a
16	MAX	chr15:42119882-42120952	A549	lung:	n/a	chr15:42120711-42120720
17	POLR2A	chr15:42119552-42120595	GM19193	blood:	n/a	n/a
18	FOSL2	chr15:42119479-42120680	HepG2	liver:	n/a	n/a
19	ZBTB7A	chr15:42119447-42120814	ECC-1	luminal epithelium:	n/a	n/a
20	CTCF	chr15:42119840-42119990	AoAF	blood vessel:	n/a	n/a
21	SP4	chr15:42119870-42120242	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPD	chr15:42119882-42120231	HepG2	liver:	n/a	n/a
23	ELF1	chr15:42119778-42120715	GM12878	blood:	n/a	n/a
24	POLR2A	chr15:42119602-42120607	GM12891	blood:	n/a	n/a
25	EBF1	chr15:42119846-42120179	GM12878	blood:	n/a	n/a
26	MAZ	chr15:42119705-42120833	K562	blood:	n/a	chr15:42120711-42120720
27	POLR2A	chr15:42119741-42120795	HL-60	blood:	n/a	n/a
28	SIN3A	chr15:42119499-42120903	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr15:42119707-42120878	PFSK-1	brain:	n/a	n/a
30	POLR2A	chr15:42119647-42120882	U87	brain:	n/a	n/a
31	POLR2A	chr15:42119524-42120788	GM12878	blood:	n/a	n/a
32	HMGN3	chr15:42119568-42120731	K562	blood:	n/a	n/a
33	POLR2A	chr15:42119453-42121180	HUVEC	blood vessel:	n/a	n/a
34	MAX	chr15:42119449-42120183	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr15:42119900-42120050	HAc	cerebellar:	n/a	n/a
36	POLR2A	chr15:42119692-42120676	GM18505	blood:	n/a	n/a
37	MAX	chr15:42119385-42120821	ECC-1	luminal epithelium:	n/a	chr15:42120711-42120720
38	ELF1	chr15:42119765-42120671	K562	blood:	n/a	n/a
39	CTCF	chr15:42119880-42120030	HCM	heart:	n/a	n/a
40	POLR2A	chr15:42119733-42121003	MCF10A-Er-Src	breast:	n/a	n/a
41	FOSL2	chr15:42119868-42120745	SK-N-SH	brain:	n/a	n/a
42	CTCF	chr15:42119860-42120010	GM12864	blood:	n/a	n/a
43	TAF1	chr15:42119541-42120760	ECC-1	luminal epithelium:	n/a	n/a
44	MAX	chr15:42119414-42120946	ECC-1	luminal epithelium:	n/a	chr15:42120711-42120720
45	FOXA1	chr15:42119878-42120223	T-47D	breast:	n/a	n/a
46	POLR2A	chr15:42119550-42120948	K562	blood:	n/a	n/a
47	POLR2A	chr15:42119883-42120791	K562	blood:	n/a	n/a
48	PML	chr15:42119550-42120699	GM12878	blood:	n/a	n/a
49	FOXM1	chr15:42119789-42120219	GM12878	blood:	n/a	n/a
50	CCNT2	chr15:42119621-42120692	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:42119864-42119914	BE2_C	brain:	n/a
2	chr15:42119864-42119914	U87	brain:	n/a
3	chr15:42119864-42119914	ovcar-3	ovarian:	n/a
4	chr15:42119864-42119914	HCM	heart:	n/a
5	chr15:42119864-42119914	AG04450	lung:	fetal
6	chr15:42119864-42119914	HCT-116	colon:	n/a
7	chr15:42119864-42119914	HepG2	liver:	n/a
8	chr15:42119864-42119914	Hela-S3	cervix:	n/a
9	chr15:42119864-42119914	PANC-1	pancreas:	n/a
10	chr15:42119864-42119914	BJ	skin:	n/a
11	chr15:42119864-42119914	ECC-1	luminal epithelium:	n/a
12	chr15:42119864-42119914	SAEC	small airway:	n/a
13	chr15:42119864-42119914	SKMC	muscle:	n/a
14	chr15:42119864-42119914	SK-N-MC	brain:	n/a
15	chr15:42119864-42119914	A549	lung:	n/a
16	chr15:42119864-42119914	K562	blood:	n/a
17	chr15:42119864-42119914	H1-hESC	embryonic stem cell:	embryo
18	chr15:42119864-42119914	ProgFib	skin:	n/a
19	chr15:42119864-42119914	IMR90	lung:	fetal
20	chr15:42119864-42119914	GM12892	blood:	n/a
21	chr15:42119864-42119914	T-47D	breast:	n/a
22	chr15:42119864-42119914	MCF10A-Er-Src	breast:	n/a
23	chr15:42119864-42119914	Jurkat	blood:	n/a
24	chr15:42119864-42119914	HRPEpiC	eye:	n/a
25	chr15:42119864-42119914	GM12891	blood:	n/a
26	chr15:42119864-42119914	HUVEC	blood vessel:	n/a
27	chr15:42119864-42119914	GM19239	blood:	n/a
28	chr15:42119864-42119914	NT2-D1	testis:	n/a
29	chr15:42119864-42119914	HRE	kidney:	n/a
30	chr15:42119864-42119914	RPTEC	kidney:	n/a
31	chr15:42119864-42119914	NHDF-neo	bronchial:	n/a
32	chr15:42119864-42119914	HNPCEpiC	eye:	n/a
33	chr15:42119864-42119914	PrEC	prostate:	n/a
34	chr15:42119864-42119914	GM06990	blood:	n/a
35	chr15:42119864-42119914	CMK	blood:	n/a
36	chr15:42119864-42119914	PFSK-1	brain:	n/a
37	chr15:42119864-42119914	HEEpiC	esophagus:	n/a
38	chr15:42119864-42119914	HCPEpiC	choroid plexus:	n/a
39	chr15:42119864-42119914	AoSMC	blood vessel:	n/a
40	chr15:42119864-42119914	NB4	blood:	n/a
41	chr15:42119864-42119914	HMEC	breast:	n/a
42	chr15:42119864-42119914	SK-N-SH_RA	brain:	n/a
43	chr15:42119864-42119914	HEK293	kidney:	embryo
44	chr15:42119864-42119914	HPAEpiC	pulmonary alveolar:	n/a
45	chr15:42119864-42119914	NH-A	brain:	n/a
46	chr15:42119864-42119914	AG04449	skin:	fetal
47	chr15:42119864-42119914	SK-N-SH	brain:	n/a
48	chr15:42119864-42119914	GM12878	blood:	n/a
49	chr15:42119864-42119914	Hepatocyte	liver:	n/a
50	chr15:42119864-42119914	NHBE	bronchial:	n/a

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:42106183..42109859-chr15:42118195..42121802,3	K562	blood:
2	chr15:42119169..42123691-chr15:42124459..42130624,7	MCF-7	breast:
3	chr15:42065876..42068807-chr15:42118615..42122663,5	K562	blood:
4	chr15:42119559..42121524-chr15:42137744..42139506,3	K562	blood:
5	chr15:42119641..42122495-chr15:42123255..42125312,3	K562	blood:
6	chr15:42102419..42105107-chr15:42118936..42121739,2	MCF-7	breast:
7	chr15:42114563..42118600-chr15:42118704..42121383,3	K562	blood:
8	chr15:42119185..42121349-chr15:42128797..42131937,4	MCF-7	breast:
9	chr15:42119178..42121855-chr15:42127765..42129934,4	K562	blood:
10	chr15:41835700..41837704-chr15:42118864..42120391,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPTBN5-1	chr15:42119835-42120053	ENSG00000250379.1

No data

Variant related genes	Relation type
JMJD7-PLA2G4B	TF binding region
JMJD7	TF binding region
PLA2G4B	TF binding region
JMJD7	CpG island
PLA2G4B	CpG island
JMJD7-PLA2G4B	CpG island
ENSG00000243708	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000168970	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000243789	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1106934	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[ASN][1000 genomes]
rs11070346	0.83[ASN][1000 genomes]
rs11070349	0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11547012	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11630242	0.93[ASN][1000 genomes]
rs11853665	0.82[ASN][1000 genomes]
rs11858843	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1197659	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.90[ASN][1000 genomes]
rs1197662	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs1197668	0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1197687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1197688	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1197689	0.86[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1197690	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1197770	0.81[ASN][1000 genomes]
rs1197773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1206842	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1209333	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439771	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.81[ASN][1000 genomes]
rs12440605	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs12591285	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.84[TSI][hapmap];0.90[ASN][1000 genomes]
rs12595271	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12901742	0.93[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1726915	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1918312	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.85[ASN][1000 genomes]
rs1918313	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs2077361	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs2077543	0.94[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs2241523	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2303517	0.81[CEU][hapmap]
rs2412639	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2412640	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2577949	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.90[ASN][1000 genomes]
rs28671571	0.87[ASN][1000 genomes]
rs2925340	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34769385	0.81[ASN][1000 genomes]
rs35033220	0.83[ASN][1000 genomes]
rs35359048	0.85[ASN][1000 genomes]
rs3816533	0.93[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4923906	0.91[CEU][hapmap];0.81[ASN][1000 genomes]
rs4923907	0.93[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs4923913	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4923917	0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4924573	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7166139	0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7168489	0.83[ASN][1000 genomes]
rs7173779	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7174099	0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7175346	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7177495	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs883329	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs890504	0.89[ASN][1000 genomes]
rs9806709	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	esv2757597	chr15:42047173-42122617	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2760027	chr15:42047173-42122617	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904114	chr15:42050390-42119900	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv904115	chr15:42076387-42171483	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904116	chr15:42076387-42229852	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1038393	chr15:42083574-42188035	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
9	esv1827003	chr15:42087505-42199076	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
10	esv1816120	chr15:42093384-42171578	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
11	nsv1041645	chr15:42095168-42186482	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
12	nsv1051200	chr15:42095168-42188035	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
13	nsv517631	chr15:42096926-42187492	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
14	nsv1051733	chr15:42098896-42186482	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
15	nsv1036153	chr15:42098896-42188035	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
16	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
17	nsv1048606	chr15:42101694-42192760	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
18	nsv904117	chr15:42103822-42184794	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
19	nsv904118	chr15:42103822-42207905	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
20	nsv904119	chr15:42109975-42142912	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv904120	chr15:42109975-42153085	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
22	nsv904121	chr15:42109975-42162957	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
23	nsv904122	chr15:42109975-42166475	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
24	nsv904123	chr15:42109975-42171483	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
25	nsv904124	chr15:42109975-42207905	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
26	nsv9244	chr15:42110712-42208805	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
27	nsv904125	chr15:42119900-42210393	Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1043627	JMJD7-PLA2G4B	cis	cerebellum	SCAN
rs1043627	MAP1A	cis	parietal	SCAN
rs1043627	VPS18	cis	parietal	SCAN
rs1043627	NUSAP1	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42117000-42120200	Enhancers	Fetal Heart	heart
2	chr15:42119400-42120000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr15:42119400-42120000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
4	chr15:42119400-42120000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:42119400-42120000	Flanking Active TSS	Dnd41	blood
6	chr15:42119400-42120200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr15:42119400-42120200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:42119400-42120600	Active TSS	Primary T cells from cord blood	blood
9	chr15:42119400-42120800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr15:42119400-42120800	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr15:42119400-42120800	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr15:42119400-42120800	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr15:42119400-42120800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr15:42119400-42120800	Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr15:42119400-42120800	Active TSS	Rectal Smooth Muscle	rectum
16	chr15:42119400-42121000	Active TSS	H1 Cell Line	embryonic stem cell
17	chr15:42119400-42121000	Active TSS	H9 Cell Line	embryonic stem cell
18	chr15:42119400-42121000	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr15:42119400-42121000	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr15:42119400-42121000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:42119400-42121000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:42119400-42121200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr15:42119400-42121200	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr15:42119400-42121200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:42119400-42121200	Active TSS	Thymus	Thymus
26	chr15:42119600-42120000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:42119600-42120000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:42119600-42120000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:42119600-42120000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:42119600-42120000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
31	chr15:42119600-42120000	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr15:42119600-42120000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:42119600-42120000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:42119600-42120000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr15:42119600-42120000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:42119600-42120000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:42119600-42120000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:42119600-42120000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:42119600-42120000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:42119600-42120000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:42119600-42120000	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr15:42119600-42120000	Flanking Active TSS	Liver	Liver
43	chr15:42119600-42120000	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr15:42119600-42120000	Flanking Active TSS	Colonic Mucosa	Colon
45	chr15:42119600-42120000	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr15:42119600-42120000	Flanking Active TSS	Fetal Brain Female	brain
47	chr15:42119600-42120000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
48	chr15:42119600-42120000	Flanking Active TSS	Fetal Muscle Leg	muscle
49	chr15:42119600-42120000	Flanking Active TSS	Placenta	Placenta
50	chr15:42119600-42120000	Flanking Active TSS	Fetal Thymus	thymus

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